Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1268 ATGGGTTTCTCACAAGACCCCTGCACTGATTCCAATGCCCCAACCTCAACCTCTTCCACCTTAGTTGTAGATCACTACTGTGACTACGACAAGCTCAAATTCAAAACCTTTCTCAGAAAAATGTTCTGGGAATTCGGTCTCGCCTGTGTGGCCAACCCTTCCCAGCGCCGGAGAAGCTCCGGCGACGGCAAAAAGACGAACATGGAGAACAACAAGGCGTGGCTGCTTGCGGAGTCTGGTGGGTGTGGAGCAGAATTGACCAATGCTGACCCTCAATCGGTTCACTCCTCTTTCAGGTTCAGCTTCTGTTCTCAGGTTGAGTTGGAGTCCCTGAACATGAGTTCTTCGGCTGCTGCAACGGTTTTGATGGTGAATTTGGACAATGGGGTGAGTGAATCGCGCGCCAATGAAATGAAGTGGAGGAGAATGGAGTCGTTGGAGAAGAGCATATCCCCTGTGGCTCACACCTTGATCAGGTTTAGCTATGGTGAAATTATGTCTGCTACTAGAAATTTCTCCAAAGGGAGGGTGTTGGGGAGAGGAGCATTGAGCTATGTTTTTAGAGGGAGAGTTGGGATTTTGAGAACTGCCGTGGCGATCAAACGGTTGGACAAGGAAGACAAGGAATCTGCCAAGGCCTTTTGTAGAGAACTGATGATTGCAAGTTCTCTTCATAGTTCAAATGTTGTTCCCCTTTTGGGGTTTTGTATTGATCCTGAGGAGGGTTTGTTTTTGGTGTACAAGTATGTCTCAGGGGGAAGCTTGGAGCGCCACTTGCATGGAAGGAAGAAGGGTAGCTCGCCTCTTCCATGGCCTGTGAGGTACAAAGTTGCAATTGGGATTGCTGAAGCTGTGGCTTATCTACATAGTGGAACTGAAAGATGTGTTGTGCACAGAGACATTAAACCCTCAAACATTCTGCTTTCTTCAAGGAAGACTCCCAAGCTATGTGATTTTGGATTAGCTACATGGACTTCTGCACCTTCAGTTCCTTTCCTTTGCAAAACTGTCAAAGGAACATTTGGATATTTGGCCCCTGAGTATTTCCAACATGGGAAAGTATCAGACAAGACTGATGTATATGCTTTTGGAGTGGTTTTGTTGGAACTCATTACTGGCCGGAAGCCGATTGAGGCAACAAGACCTTCAGGAGATGAGAACTTGGTCTTATGGGCTAAACCTTTTCTACAAAAAGGGAAAGGAGCAATTGAAGAGTTGCTCGATCCTCAACTCAAGTGCAGTCTTAAATTCTCAAATCAAATGGGTAGAATGATTGAAGCAGCAGGTGCCTGTGTCACAAATGAAGAATCTCGACGACCTGGCATACGTGAGATTATTGCAATACTGAAAGGTGAAGAAGAACCTCTTCTCTCCAAAAGAAAGAAGTCCAGTTTTCTTGGGAATGGATGTGTGATTGATTGTTATTCTCAGTTACAACAAACAAATAATGAGATGAAAAGTCACTTGGCATTAGCAATGTTAGGTGTTGCAGAGTTTGAGGATGATGATTATCTCTATGGTCGATAA 1527 0.4512 MGFSQDPCTDSNAPTSTSSTLVVDHYCDYDKLKFKTFLRKMFWEFGLACVANPSQRRRSSGDGKKTNMENNKAWLLAESGGCGAELTNADPQSVHSSFRFSFCSQVELESLNMSSSAAATVLMVNLDNGVSESRANEMKWRRMESLEKSISPVAHTLIRFSYGEIMSATRNFSKGRVLGRGALSYVFRGRVGILRTAVAIKRLDKEDKESAKAFCRELMIASSLHSSNVVPLLGFCIDPEEGLFLVYKYVSGGSLERHLHGRKKGSSPLPWPVRYKVAIGIAEAVAYLHSGTERCVVHRDIKPSNILLSSRKTPKLCDFGLATWTSAPSVPFLCKTVKGTFGYLAPEYFQHGKVSDKTDVYAFGVVLLELITGRKPIEATRPSGDENLVLWAKPFLQKGKGAIEELLDPQLKCSLKFSNQMGRMIEAAGACVTNEESRRPGIREIIAILKGEEEPLLSKRKKSSFLGNGCVIDCYSQLQQTNNEMKSHLALAMLGVAEFEDDDYLYGR* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1268 508 PANTHER OS01G0750732 PROTEIN 1 506 - -
Gso13g1268 508 ProSiteProfiles Protein kinase domain profile. 172 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g1268 508 ProSitePatterns Serine/Threonine protein kinases active-site signature. 296 308 IPR008271 GO:0004672|GO:0006468
Gso13g1268 508 Gene3D Transferase(Phosphotransferase) domain 1 250 464 - -
Gso13g1268 508 Pfam Protein kinase domain 173 446 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g1268 508 SMART serkin_6 172 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g1268 508 SUPERFAMILY Protein kinase-like (PK-like) 155 455 IPR011009 -
Gso13g1268 508 Gene3D Phosphorylase Kinase; domain 1 131 249 - -
Gso13g1268 508 PANTHER SERINE/THREONINE-PROTEIN KINASE CDL1 1 506 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1268 Gso-Chr13 27958252 27961370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1268 150 450 Receptor kinase-like Gene Family AT5G56890 42.715 1.86e-67 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Gso13g1268 Pkinase 9.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1268 - - gmx:100808074 1014.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0347 18 3283586 3286862 Gso13g1268 13 27958252 27961370 GST
Gso13g1268 13 27958252 27961370 Gso14g1822 14 50563258 50566439 PCT
Gso13g1268 13 27958252 27961370 Gso2g2098 2 45582569 45585647 PCT
Gso14g1822 14 50563258 50566439 Gso13g1268 13 27958252 27961370 PCT
Gso2g2098 2 45582569 45585647 Gso13g1268 13 27958252 27961370 PCT