Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1260 ATGAAGAGGGACCACAAAGATAGCTGCGGCGGCGGCGGCGCCGCCGGAGGGACTGTGAAGGGTGAGTGTTCCTCAATGCAGTCAAACGGGAAGGCGAAGATGTGGGAGGAAGAGCAACAGCAGCAGCAGCAGCAACAACAGCAACAACAACAACAGGGGATGGACGAGTTGCTGGCGGCGTTGGGGTACAAGGTTCGTGCTTCCGACATGGCTGACGTGGCACAGAAGCTGGAGCAGTTGGAGATGGTCATGGGTTGTGCCCAGGAAGACGGAATTTCCCACCTGGCCTCCGACACCGTTCATTACGACCCTACAGATCTCTATTCCTGGGTCCAAAGCATGTTAACCGAACTCAACCCCGAACCCAACAACAACCTCGATCCATCTTCTTTCTTGATCGACAACAACAACAACATCATCAACAGCACAGCCCCTGTTTTCAACGACGATTCCGAATATGACCTCAGAGCCATTCCTGGCATAGCAGCCTACCCTCCTCCTCTTCCTCAAGACAACCACCTCGACGAAATCGAAACGGCTAACAACAACATCAACAAGCGCCTCAAGCCATCTCCAGCGGAATCAGCAGACTCCGCCGCGTCTGAGCCCACGCGCCATGTCGTCCTCGTTGACCATCAGGAAGCCGGCGTGCGTCTCGTCCACACTCTCCTGGCGTGCGCGGAGGCCGTTCAGCAGGAGAATCTCAAGCTCGCCGACGCGCTCGTCAAGCACGTGGGCATACTCGCGGCTTCCCAAGCCGGCGCCATGAGGAAGGTTGCTTCCTACTTCGCCCAAGCCCTGGCGCGTAGAATCTACGGAATCTTCCCCGAAGAAACCCTCGATTCCTCCTTCTCCGACGTTCTCCACATGCACTTTTACGAGTCTTGCCCTTATCTCAAATTCGCGCACTTCACCGCGAATCAGGCCATCCTCGAAGCCTTCGCCACCGCCGGGAAAGTCCACGTCATCGATTTCGGCCTCAAACAAGGGATGCAGTGGCCGGCACTCATGCAGGCCCTCGCATTACGGCCCGGCGGGCCCCCGACTTTCCGTTTAACCGGAATCGGGCCCCCACAGCCCGACAACACCGACGCGCTGCAGCAGGTGGGCTTGAAATTAGCCCAATTGGCCCAAATCATCGGCGTCCAGTTCGAATTCCGCGGCTTCGTTTGCAACAGCCTCGCGGATCTCGACCCGAATATGCTCGAGATCCGACCCGGGGAAGCCGTGGCAGTGAATTCCGTCTTCGAACTCCACCGCATGCTCGCCCGGTCCGGATCCGTCGACAAGGTCTTGGACACTGTCAAGAAAATTAATCCCCAGATCGTTACCATCGTGGAACAAGAAGCGAACCACAACGGACCGGGTTTTCTAGACCGGTTCACTGAAGCCTTGCATTACTATTCCAGTCTTTTCGACTCGCTTGAGGGTTCGTCTTCTTCTTCGACCGGGTTGGGCTCGCCGAGTCAGGATCTGTTGATGTCCGAGTTGTACCTTGGGAGACAGATTTGCAACGTGGTGGCTTACGAGGGCCCGGACCGGGTCGAGCGGCACGAGACTTTGACTCAGTGGAGGGGGAGATTGGACTCGGCCGGGTTCGACCCGGTTCATCTCGGGTCCAACGCATTCAAGCAAGCGAGTATGCTACTTGCTCTATTCGCAGGCGGTGATGGGTATAGGGTTGAGGAGAATAACGGCTGCCTCATGCTTGGCTGGCACACTAGGCCACTCATCGCTACCTCCGCTTGGAAGCTTCCCTCCTCCAGCGAGTCTAGTGGCTTGACTCAGTGA 1791 0.5712 MKRDHKDSCGGGGAAGGTVKGECSSMQSNGKAKMWEEEQQQQQQQQQQQQQQGMDELLAALGYKVRASDMADVAQKLEQLEMVMGCAQEDGISHLASDTVHYDPTDLYSWVQSMLTELNPEPNNNLDPSSFLIDNNNNIINSTAPVFNDDSEYDLRAIPGIAAYPPPLPQDNHLDEIETANNNINKRLKPSPAESADSAASEPTRHVVLVDHQEAGVRLVHTLLACAEAVQQENLKLADALVKHVGILAASQAGAMRKVASYFAQALARRIYGIFPEETLDSSFSDVLHMHFYESCPYLKFAHFTANQAILEAFATAGKVHVIDFGLKQGMQWPALMQALALRPGGPPTFRLTGIGPPQPDNTDALQQVGLKLAQLAQIIGVQFEFRGFVCNSLADLDPNMLEIRPGEAVAVNSVFELHRMLARSGSVDKVLDTVKKINPQIVTIVEQEANHNGPGFLDRFTEALHYYSSLFDSLEGSSSSSTGLGSPSQDLLMSELYLGRQICNVVAYEGPDRVERHETLTQWRGRLDSAGFDPVHLGSNAFKQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIATSAWKLPSSSESSGLTQ* 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1260 596 Pfam Transcriptional regulator DELLA protein N terminal 55 122 IPR021914 -
Gso13g1260 596 MobiDBLite consensus disorder prediction 1 51 - -
Gso13g1260 596 Pfam GRAS domain family 219 584 IPR005202 -
Gso13g1260 596 MobiDBLite consensus disorder prediction 21 51 - -
Gso13g1260 596 ProSiteProfiles GRAS family profile. 210 584 IPR005202 -
Gso13g1260 596 PANTHER DELLA PROTEIN RGL1 48 584 IPR030006 GO:0003712|GO:0005634
Gso13g1260 596 Coils Coil 32 52 - -
Gso13g1260 596 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 48 584 IPR005202 -
Gso13g1260 596 Gene3D - 53 118 IPR038088 -
Gso13g1260 596 SMART DELLA_2 55 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1260 Gso-Chr13 27864804 27867022 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1260 38 588 GRAS Transcription Factor Family AT1G14920 62.100 0.0 686
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gso13g1260 GRAS 2.6e-136 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1260 K14494 - gmx:547719 1112.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0353 18 3358298 3360579 Gso13g1260 13 27864804 27867022 GST