Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1258 ATGGCAACTGGGCAAGTCATTAATAAACCTCCTCCTTCACTGCCTCCGTACCCTGAGATGATTCTGGAGGCAATTGAAGCACTGAATGAAGAGAATGGTTCGAATAAATCATCAATTTCGAAGTACATCGAATCCACCTATGGTGGATTGCCTCAGGCCCACAAGGTTTTGCTCAATGTGCACCTCGCGAAAATGAGGGAAAGTGGAGTGCTAGTGTTTTGGAAGAACAACTACACCAAGCGTGACCCAAATGCGCCGCCACGGCGGGGCCGTGGCAGGCCACCCAAGCCCAAGGAGCCTCTGCCACCGGGCACTGTCTTATCACCGCCCAGGCCCAGGGGCCGTCCTTCGAAGGACCCAAATGACCTGCAGAAGCCTCTTAAGGCTTCGGTGGTGGGTAGTGGTAGGCCTCGAGGCCGGCCCAGAAAAATGGCCTGGCCCACTGGAGGCCTTGGCAAAGTATCACCGGCCTCTAAGGCGAAGCCTGTCACTAGTAGTGGGAGGCCCAGAGGTAGGCCTCCCAAAGTGAAGCCCGTGTTCACTGAAATTAGTGTTTGA 558 0.5484 MATGQVINKPPPSLPPYPEMILEAIEALNEENGSNKSSISKYIESTYGGLPQAHKVLLNVHLAKMRESGVLVFWKNNYTKRDPNAPPRRGRGRPPKPKEPLPPGTVLSPPRPRGRPSKDPNDLQKPLKASVVGSGRPRGRPRKMAWPTGGLGKVSPASKAKPVTSSGRPRGRPPKVKPVFTEISV* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1258 185 PRINTS High mobility group protein (HMGY) signature 86 98 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Gso13g1258 185 PRINTS High mobility group protein (HMGY) signature 110 121 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Gso13g1258 185 PRINTS High mobility group protein (HMGY) signature 124 143 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Gso13g1258 185 Gene3D - 10 88 IPR036388 -
Gso13g1258 185 MobiDBLite consensus disorder prediction 97 114 - -
Gso13g1258 185 SMART AT_hook_2 88 100 IPR017956 GO:0003677
Gso13g1258 185 SMART AT_hook_2 110 122 IPR017956 GO:0003677
Gso13g1258 185 SMART AT_hook_2 135 147 IPR017956 GO:0003677
Gso13g1258 185 SMART AT_hook_2 167 179 IPR017956 GO:0003677
Gso13g1258 185 SUPERFAMILY "Winged helix" DNA-binding domain 10 95 IPR036390 -
Gso13g1258 185 PANTHER HISTONE H1 1 182 - -
Gso13g1258 185 SMART h15plus2 11 77 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gso13g1258 185 Pfam AT hook motif 110 121 IPR017956 GO:0003677
Gso13g1258 185 Pfam AT hook motif 135 145 IPR017956 GO:0003677
Gso13g1258 185 Pfam AT hook motif 167 177 IPR017956 GO:0003677
Gso13g1258 185 PANTHER HMG-Y-RELATED PROTEIN A 1 182 IPR031059 GO:0003677|GO:0005634
Gso13g1258 185 MobiDBLite consensus disorder prediction 78 185 - -
Gso13g1258 185 Pfam linker histone H1 and H5 family 15 75 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gso13g1258 185 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 13 82 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gso13g1258 185 PRINTS AT-hook-like domain signature 88 98 IPR017956 GO:0003677
Gso13g1258 185 PRINTS AT-hook-like domain signature 108 119 IPR017956 GO:0003677
Gso13g1258 185 PRINTS AT-hook-like domain signature 133 143 IPR017956 GO:0003677
Gso13g1258 185 MobiDBLite consensus disorder prediction 82 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1258 Gso-Chr13 27833555 27834891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1258 5 92 Single Myb Histone (SMH) Gene Family AT1G49950 38.947 2.05e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1258 - - gmx:100804682 322.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0355 18 3397681 3399002 Gso13g1258 13 27833555 27834891 GST
Gso13g1258 13 27833555 27834891 Gso14g1813 14 50501871 50503281 PCT
Gso13g1258 13 27833555 27834891 Gso2g2089 2 45497008 45498543 PCT