Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1257 ATGGCTTCTTCCTTGGACATGTCACTTGATGATAGAATAAAGAACAGAAGTAACAACAGAGGGAGAGGTAGAGGAGGACGTGGCAGAGCTCATTCTGGCCGTGGACCAAGCGGCACTCTTAATGGTAGAAGAATGGTTGGTGCTGTTAATAGTAGAAGAATGGCTGGTGCTGGTAATGGTGGAAGAACAACTGGTGCTGTTCGTAGAGGGCCTCTTATGGTTAACACTCGGCCGTCGTCGTATGCTATTGCCAAGTCTATTCGCAGAGCTAGGCCTTTTCCATGGCAGCATGATTTGTTTGAAGATAGCCTAAGAGCTGCAGGGATTCAAGGAGTAGAAGTTGGCACCAAGTTGTATGTTTCCAATTTGGACCATGGAGTGACCAATGAAGACATAAGGGAACTTTTCTCTGAGCTTGGAGAGTTGAAGCGTTTTGCTGTTCATTATGACAAAAATGGACATCCAAGTGGTTCAGCTGAAGTCGTTTATACTAGAAGAAGTGATGCATTTGCTGCCCTTAAACGATATAATAACGTACTTTTGGATGGAAAGCCCATGAAGATTGAGATTGTTGGTTCCAATTCAGAATTGCCCATAAGTGCTCGGGTAAATGTCACTGGGGTGAATGGACGTAGGAAGAGGACTGTTGTAATGACGTCTAGAGGTGGACAAGCTGGAGGTGGTCCTGCTATGCCTACACGTGGTGCTGGTTGGGGACGTCGAGGTGGCCCAAGGAGTGGCAGTGGACGTGGTGGAGCTGGAGGTCGAGGTCGTGGTCGCGGCAGGGGTGGAGCTGGAGGTAGAGGTCGTGGGAGAAAGGACGCTGTTGAGAAGTCAGCGGAGGAACTTGACAAGGAGCTGGAGACCTATCATGCTGAGGCCATGAACATCTCTTGA 897 0.4872 MASSLDMSLDDRIKNRSNNRGRGRGGRGRAHSGRGPSGTLNGRRMVGAVNSRRMAGAGNGGRTTGAVRRGPLMVNTRPSSYAIAKSIRRARPFPWQHDLFEDSLRAAGIQGVEVGTKLYVSNLDHGVTNEDIRELFSELGELKRFAVHYDKNGHPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEIVGSNSELPISARVNVTGVNGRRKRTVVMTSRGGQAGGGPAMPTRGAGWGRRGGPRSGSGRGGAGGRGRGRGRGGAGGRGRGRKDAVEKSAEELDKELETYHAEAMNIS* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1257 298 PANTHER THO COMPLEX SUBUNIT 4C 1 297 - -
Gso13g1257 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 193 IPR000504 GO:0003723
Gso13g1257 298 SUPERFAMILY RNA-binding domain, RBD 44 190 IPR035979 GO:0003676
Gso13g1257 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 118 186 IPR000504 GO:0003723
Gso13g1257 298 Pfam C-terminal duplication domain of Friend of PRMT1 239 292 IPR025715 -
Gso13g1257 298 MobiDBLite consensus disorder prediction 267 291 - -
Gso13g1257 298 MobiDBLite consensus disorder prediction 1 43 - -
Gso13g1257 298 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 297 - -
Gso13g1257 298 SMART rrm1_1 117 189 IPR000504 GO:0003723
Gso13g1257 298 SMART FoP_duplication_2 221 298 IPR025715 -
Gso13g1257 298 MobiDBLite consensus disorder prediction 220 298 - -
Gso13g1257 298 Coils Coil 273 293 - -
Gso13g1257 298 Gene3D - 111 193 IPR012677 -
Gso13g1257 298 CDD RRM_THOC4 116 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1257 Gso-Chr13 27815233 27820461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1257 115 196 Eukaryotic Initiation Factors Gene Family AT2G23350 36.585 2.68e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1257 K12881 - gmx:100820344 474.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0356 18 3401682 3406919 Gso13g1257 13 27815233 27820461 GST