Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1254 ATGGGAAGGCAACCTTGCTGTGACAAAGTGGGGTTGAAGAAGGGGCCATGGACCGCAGAGGAGGATAAGAAACTCATCAATTTCATCCTCACTAATGGCCAATGTTGCTGGAGAGCTGTCCCTAAACTAGCAGGGCTGTTAAGGTGTGGCAAAAGTTGCAGGCTCAGGTGGACAAATTATCTGAGGCCAGACTTGAAGAGAGGCCTTCTATCAGAATATGAAGAGAAAATGGTCATTGATCTCCATGCTCAACTTGGCAATAGATGGTCTAAGATTGCTTCTCATCTCCCAGGAAGAACTGATAATGAGATCAAGAATCACTGGAACACCCACATAAAGAAAAAGCTCAAGAAAATGGGAATTGATCCTGTTACTCACAAGCCACTTTCCAATAAAACTGAGCAAACTCAAGCCCAACCAGATGAACAACAAACCCACCAACCATTGCAAGAACAACAAGAAGAACCTATCCCAGTTGAGAAAGACACCAAATTTGAACCTGAAAAAGAGCAAAACAAGGAGCCAGAGAAGCCAGAGAGTTCAATTGAATCATTAACCATCACTGAAGAAGCCAAGGAGGAAGACCAAATTATGACACCCTTATTTGACTCATGGGAACTAATGAATGAGTTCTGCACTGATGAAGTTCCCATAATAGAATCAAATGAGATTCTAGTTCCTTCTGCTCCTTCTTCCACTTCACCAACCACTACTACTACTACATCATCTTCAACATCAACATCAGCATCTTCAAATTCAAATTCATCCAACTTCCTTGAAGACCTTCTGCTCCCAGATTTTGAGTGGTCTGATGATTACAATGATACTAATTTTGACAATAATAACAATAGCAGCATGGCCTTGTGGGATGATGACTTTATTAGAAGTTGGAATTTGCTTATTAATGATGATGATGGTGATGGTGACAGAAAGCAAGTGTTTGAGGCTCCTATCAATCAGTACCCAAGAGTGATCATGGATTCAGATTCTTGGGCCTATGGCTTGTTTTGA 1011 0.4135 MGRQPCCDKVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPVTHKPLSNKTEQTQAQPDEQQTHQPLQEQQEEPIPVEKDTKFEPEKEQNKEPEKPESSIESLTITEEAKEEDQIMTPLFDSWELMNEFCTDEVPIIESNEILVPSAPSSTSPTTTTTTSSSTSTSASSNSNSSNFLEDLLLPDFEWSDDYNDTNFDNNNNSSMALWDDDFIRSWNLLINDDDGDGDRKQVFEAPINQYPRVIMDSDSWAYGLF* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1254 336 MobiDBLite consensus disorder prediction 155 180 - -
Gso13g1254 336 SMART sant 66 114 IPR001005 -
Gso13g1254 336 SMART sant 13 63 IPR001005 -
Gso13g1254 336 Gene3D - 11 67 - -
Gso13g1254 336 CDD SANT 16 61 IPR001005 -
Gso13g1254 336 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gso13g1254 336 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Gso13g1254 336 MobiDBLite consensus disorder prediction 225 255 - -
Gso13g1254 336 MobiDBLite consensus disorder prediction 128 152 - -
Gso13g1254 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gso13g1254 336 PANTHER MYB TRANSCRIPTION FACTOR 1 308 - -
Gso13g1254 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gso13g1254 336 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gso13g1254 336 CDD SANT 74 112 IPR001005 -
Gso13g1254 336 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 308 - -
Gso13g1254 336 MobiDBLite consensus disorder prediction 119 195 - -
Gso13g1254 336 Gene3D - 70 154 - -
Gso13g1254 336 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gso13g1254 336 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1254 Gso-Chr13 27772583 27775097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1254 1 304 MYB Transcription Factor Family AT1G66230 56.270 8.97e-104 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso13g1254 Myb_DNA-binding 9.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1254 K09422 - gmx:100803624 573.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0359 18 3448160 3450656 Gso13g1254 13 27772583 27775097 GST
Gso14g1809 14 50461281 50463641 Gso13g1254 13 27772583 27775097 PCT