Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1244 ATGACTAGAAAGAAGGTGAAGTTGGCATTCATAGCCAATGACTCAGCTAGGAAGGCAACATTCAAGAAAAGGAAGAAGGGTCTAATGAAGAAGGTTAGTGAACTTAGCACCCTTTGTGGGATTGATGCATGTGCAATTGTTTACAGTTCCTATGATCCTCAACCTGAGGTTTGGCCATCCCCAATGGGGGTTCAAAGGGTGCTTAGTAAGTTCAGGAGAATGCCTGAACTGGAGCAAAGCAAGAAGATGGTGAACCAAGAGAGTTTTCTGAGGCAGAGGATCATGAAGGCCAAAGACCAGTTGAAGAAACAAAGGAAGGATAATAGGGAAAAGGAGATGACTCAGCTCATGTTTCAATACCTTAGTGCAGGTAAGATCATGCACAATATAAGCATGGTTGACTTGAATGATCTGGCTTGGTTGATTGACCAGAACTTGAAGGATATCAACAGAAGGATTGAGGTGTTGACTAAGAATGTTCAAAGTCAACCACAAATTGCAGCACCAGTGGTGACTGATGTTGTTGCCAAGGTTGAAGACAATGGACAAGGGAGTCAGCATGGCCAGCAGGGGTTTGATATCAACGTGGATCTCATGCAGAAGCAGAATTGGTTTATGAATTTGATGAATAATGGCAGCGGCGGTGGTGGTGCTGGGAATGAGGCTATGCCTTTTGTTGGAGATGTTAATCAACAAAATGGCTTTTGGCCTAATCCTTTTTTCCATTGA 729 0.4335 MTRKKVKLAFIANDSARKATFKKRKKGLMKKVSELSTLCGIDACAIVYSSYDPQPEVWPSPMGVQRVLSKFRRMPELEQSKKMVNQESFLRQRIMKAKDQLKKQRKDNREKEMTQLMFQYLSAGKIMHNISMVDLNDLAWLIDQNLKDINRRIEVLTKNVQSQPQIAAPVVTDVVAKVEDNGQGSQHGQQGFDINVDLMQKQNWFMNLMNNGSGGGGAGNEAMPFVGDVNQQNGFWPNPFFH* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1244 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Gso13g1244 242 ProSiteProfiles MADS-box domain profile. 1 50 IPR002100 GO:0003677|GO:0046983
Gso13g1244 242 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Gso13g1244 242 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Gso13g1244 242 Coils Coil 87 114 - -
Gso13g1244 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 196 - -
Gso13g1244 242 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 196 - -
Gso13g1244 242 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Gso13g1244 242 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gso13g1244 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso13g1244 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso13g1244 242 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1244 Gso-Chr13 27580228 27581287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1244 1 156 Type I MADS-box Gene Family AT5G48670 68.590 2.07e-67 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gso13g1244 SRF-TF 1.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1244 - - gmx:100816084 466.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0371 18 3617288 3618709 Gso13g1244 13 27580228 27581287 GST