Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1243 ATGGTTTTGTCTTGGACTAGAAGAAACGTTTTCCGCCGTGCAAAGAAGGAGAAGGAACAAAGTCAACTATTAGAAGTTGAGGTTGTGATTCCCAACCACTTTCGCTGTCCGGTGAGTTTGGAGCTGATGACAGATCCGGTGACTTTATCAACCGGCATTACCTACGACCGTGTGAGCATCGAGAAGTGGATCGAGGGAGAAAACAGAACCTGCCCCGTCACCAACCAGGTGCTGACAACCTTCGACCTCATCCCCAACCATGCCATTCGCATGATGATTCAGGATTGGTGCGTCCAAAACAGTTCTTATGGGATTGAAAGAATCCCCACTCCTCGTATTCCCATCTCCAGCTACGAGGTATCCGACACTTGTACGAGGATCTTGTCGGCTTGCCAGCGTGGGGACAATAAGAGGTGTCAGGAGTTGGTTGGAAAGATTAAGGTTTGGGGTAGAGAGAGTGAGAGGAACAAGAGGTGCATAGTTGGTGCTGGTGCTGGTGCTGTTCTTGCATATGCCTTTGATTGTTTCTCAAGTAACTCTATTGATAAGCATGTGGTTGTTTTGGAGGAGGTTTTGGAGGTGATGACATGGATGATCCCATTTGGGGAAGAGGGTGTTTCTAAATTGAGTTCAAGAGCTTCTTTGAATTCATTGGTTTGGTTTCTAGAAGGGAAAGACCTTGCATCAAGGCAAAGTGCTGCTTTGTTGCTTAAAGAAGTGTGTGTGCAAGAATTGGCCAAGGTTGGAAATGTTGTTGAGGCTTTGGTTAAGATGCTTAGGGAGTCTATTGGGAGTAGTACTTCCACAAAGGCTTGTTTGGCAACAATTTTTAACTTGGTTTCTTCGGCGGCTGCGAATAGAGAGGGGATTGTTCAAAGATTTGTGGAGCTGGGTTTGGTTTCACTTTTGCTTGAGGCTATTGTTGATGGAGAAAAAGGGGTGTGTGAGAAGGCACTTGGGGTGTTGGATTGCATTTGTGATTGCCAAAAGGGGAAGGAGGTTGTTGAAACCAATGCTCTTGCCTTGCCTCTTGTTGTTAAGAAGCTTTTGAGGGTGTCACCATTGGCTTCAAGTTTTGCTGTGTCTATTCTAAGGAAGATTTGTGACAAGAGGGAGGAAGGCGTTCTGGTTGAGGCACTTCAAGTTGGGGTTTTTCAGAAGCTCTTGGTTATGCTGCAGGTTGGGTGTGATGAGAGCACCAAGGAGAATGCTACCCGGTTGTTGAAACTGTTGAATGGTTACAGGAACAAAGCGGAGTGCACTGACTCATCATCATTGGATTTCAAGCATCTTAAGAAGCCATTCTAA 1308 0.4587 MVLSWTRRNVFRRAKKEKEQSQLLEVEVVIPNHFRCPVSLELMTDPVTLSTGITYDRVSIEKWIEGENRTCPVTNQVLTTFDLIPNHAIRMMIQDWCVQNSSYGIERIPTPRIPISSYEVSDTCTRILSACQRGDNKRCQELVGKIKVWGRESERNKRCIVGAGAGAVLAYAFDCFSSNSIDKHVVVLEEVLEVMTWMIPFGEEGVSKLSSRASLNSLVWFLEGKDLASRQSAALLLKEVCVQELAKVGNVVEALVKMLRESIGSSTSTKACLATIFNLVSSAAANREGIVQRFVELGLVSLLLEAIVDGEKGVCEKALGVLDCICDCQKGKEVVETNALALPLVVKKLLRVSPLASSFAVSILRKICDKREEGVLVEALQVGVFQKLLVMLQVGCDESTKENATRLLKLLNGYRNKAECTDSSSLDFKHLKKPF* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1243 435 SUPERFAMILY ARM repeat 127 411 IPR016024 -
Gso13g1243 435 SUPERFAMILY RING/U-box 22 106 - -
Gso13g1243 435 Pfam U-box domain 30 101 IPR003613 GO:0004842|GO:0016567
Gso13g1243 435 ProSiteProfiles U-box domain profile. 29 103 IPR003613 GO:0004842|GO:0016567
Gso13g1243 435 SMART Ubox_2 33 96 IPR003613 GO:0004842|GO:0016567
Gso13g1243 435 PANTHER WDSAM1 PROTEIN 16 435 IPR045185 GO:0061630
Gso13g1243 435 Gene3D - 119 410 IPR011989 -
Gso13g1243 435 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 21 16 435 - -
Gso13g1243 435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 107 IPR013083 -
Gso13g1243 435 CDD RING-Ubox_PUB 34 76 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1243 Gso-Chr13 27576514 27578234 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1243 25 435 U-box Gene Family AT5G37490 46.172 1.33e-120 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1243 - - gmx:100800966 819.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0372 18 3619921 3621549 Gso13g1243 13 27576514 27578234 GST
Gso13g1243 13 27576514 27578234 Gso14g1793 14 50262357 50263968 PCT
Gso13g1243 13 27576514 27578234 Gso2g2069 2 45294522 45296197 PCT
Gso14g1793 14 50262357 50263968 Gso13g1243 13 27576514 27578234 PCT
Gso2g2069 2 45294522 45296197 Gso13g1243 13 27576514 27578234 PCT