Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1242 ATGAAACAACACTTTGATCTTGAAGTGGTGGCCTCAGAAGAATATGAATCTGAAGTTAGCAGCCTGGTTACTTCCAATATATCAATTCAAGAAACCTATGCAGGTCCTTGCAGTGACAACCTCACCAAATTTTTCAATGTCACAAATCCAATAGAACTTCATCTCCATTCAGATTCTATCTCCCTTGACTTAACTCTAAAGTTCAACAACAATGACTTGGTGGTTAGAAATTCAGCAGGACTCTCCTTCTCAAGCACTAGTGAGAGCAGCATTAATGATCCTCCCTCTCAAACTAATCCAGCGAACAATCCGCGAGTCTTCTCTTGCAATTACTGCAAGCGAAAGTTTTTCAGCTCGCAGGCTCTTGGAGGACACCAAAATGCGCACAAGAGAGAAAGAACAATTGCAAAGAGAGCAATGCGAATGGGGATCTTCTCTGAGAGATATGAAAGTCTAGCATCTCTCCCCTTTAATGGTTCTTTCAGGTCCTTAGGGATAAAGGCACACTCTTCTCTGCACCATGGTTTTGTGCCAACAACGAAAAGCAGTGCAAGATTTGAGCAAGGATATGTTGGTCTTCCAATATTCTTGGAGGAGGATGAGGAAGAACTCTTGTGGCAAGGTAGTTACCATCAGGTTCCCTCTGAGGGAGGCCATACTCATCAGAATTTCTCACTGAGTGGAAGTTCAATTTTGAGTTTCGTTGGGGAGAACGCGAATCATCCACCTGAGTTGACATTGAAACTTTGA 750 0.428 MKQHFDLEVVASEEYESEVSSLVTSNISIQETYAGPCSDNLTKFFNVTNPIELHLHSDSISLDLTLKFNNNDLVVRNSAGLSFSSTSESSINDPPSQTNPANNPRVFSCNYCKRKFFSSQALGGHQNAHKRERTIAKRAMRMGIFSERYESLASLPFNGSFRSLGIKAHSSLHHGFVPTTKSSARFEQGYVGLPIFLEEDEEELLWQGSYHQVPSEGGHTHQNFSLSGSSILSFVGENANHPPELTLKL* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1242 249 ProSiteProfiles Zinc finger C2H2 type domain profile. 107 134 IPR013087 -
Gso13g1242 249 PANTHER ZINC FINGER PROTEIN JAGGED 1 249 IPR045320 GO:0003700
Gso13g1242 249 ProSitePatterns Zinc finger C2H2 type domain signature. 109 129 IPR013087 -
Gso13g1242 249 SUPERFAMILY beta-beta-alpha zinc fingers 104 134 IPR036236 -
Gso13g1242 249 Gene3D Classic Zinc Finger 86 154 - -
Gso13g1242 249 PANTHER ZINC FINGER PROTEIN 3-RELATED 1 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1242 Gso-Chr13 27534443 27537920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1242 70 249 C2H2 Transcription Factor Family AT1G24625 41.237 1.12e-34 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso13g1242 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1242 - - gmx:100815016 481.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0374 18 3650007 3653352 Gso13g1242 13 27534443 27537920 GST
Gso13g1242 13 27534443 27537920 Gso14g1791 14 50222777 50225927 PCT
Gso13g1242 13 27534443 27537920 Gso2g2066 2 45263531 45267206 PCT
Gso14g1791 14 50222777 50225927 Gso13g1242 13 27534443 27537920 PCT
Gso2g2066 2 45263531 45267206 Gso13g1242 13 27534443 27537920 PCT