Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1230 ATGAACATCCATCCCCATTTCCCAATGTCACCACTTCAAACACCCTTCTTCATCACCTTCTTCTTCCTATGTTGTCTCAATGCCTCTTCTTCTATTTTCGCCACCACCCAATTTGACTTTGCGACTTTAACTATGAGCACTTTGAAGCTTCTCGGCGATGCCCATTTGAACAACAACACCGTCAGCCTCACCGGCGACCCCGCCGTCCCCAACTCCGCCGCCGGCAGAGCCCTATACTCCGCCCCCGTCAGATTCCGGCAACCGGGCACCCCTTCTCCGGCGAGCTTCTCCACCTTCTTCTCCTTCTCCGTCACCAACCTCAACCCCTCCTCCGTCGGCGGCGGCCTCGCCTTCGTCATCTCGCCGGACTCCTCCGCCGTCGGCGACCCCGGCGGCTTCCTCGGCCTCCAGACCGCCGCCGGCGGAACCTTCCTCGCCGTGGAATTCGACACCCTTATGGACGTGGAATTCAGCGACGTCAACGGAAACCACGTCGGGTTGGACCTAAACAGCGTCGTTTCGACGCAAGTTTCCGACTTGGGAACCATCGGAGTGGATCTCAAAAGCGGCGACTCGGTGAACGCATGGATCGAGTACGACGGAAACGCCAAAGGGTTGCGCGTTTGGGTCTCGTACTCGAACCTTCGTCCCAAAGATCCGATTTTGAAGGTGGATCTCGATGTGGGTATGTACGTTGACGATTTCATGTATGTGGGTTTTTCTGGGTCTACACAAGGTAGCACCGAGGTTCACAGTGTTGAGTGGTGGAGTTTTAATTCTTCTTTCGATTCCGCGGCGGCTCCTGCCGCCGCCACGTCTGTGCAAAAGGAGCGTAAGTCTTCTAAGAAGAGTACTGTGGGGGCAGTTGCTGGGGTTGTCACTGCTGGTGCTTTTGTTCTTGCTCTCTTTGCTGGTGCGTTGATTTGGTTGTATTCTAACAAGGTTAAGTACTATGTGAAGAAGCTTGATCATTCTATTGAGTCGGAGATTATTAGAATGCCTAAGGAGTTTAGCTACAAGGAGCTGAAGTTGGCCACTAAGGGGTTCAGTGCTAATAGGGTCATTGGTCATGGAGCTTTCGGGACTGTTTACAAGGGCGTGTTGCCAGAGAGCGGCGACATTGTTGCGGTGAAGAGGTGTAACCATAGTGGTCAGGGGAAGAATGAGTTTTTGTCTGAGTTGTCTATAATTGGAAGTCTAAGGCATAGGAATTTGGTTCACCTTCAAGGTTGGTGCCATGAGAAAGGTGAGATTTTGTTGGTGTATGACTTGATGCCAAATGGGAGTCTAGATAAGGCCTTGTATGAGTCTAGAATGGCTCTGTCTTGGCCTCATAGGCTCAAAATTTTGTTAGGCGTGTCGTCTGTTTTGGCCTACTTGCATCATGAATGCGAAAACCAGGTAATTCATAGGGACATTAAGACTAGTAACATTATGTTAGATGAAGGGTTCAATGCTAGGTTAGGTGATTTTGGTTTGGCGAGGCAAACGGAACATGACAAGTCTCCCGATGCCACCGTAGCTGCTGGGACAATGGGGTACCTCGCGCCTGAGTACGTGCTTACCGGTAGAGCCACTGAGAAAACTGATGTGTTTAGCTATGGTGCTGTGGTTCTTGAGGTGGCCAGTGGGAGGAGGCCTATTGAGAAAGATGATGATGCTGCTGCTGGGAATGGTAAAGTTGGAATTAGCAGCAATTTGGTGGAATGGGTTTGGAGTTTGCATCAAGATGGTAAGTTGCTAACGGCAGCTGATCCGAGACTTGAAGGCGAGTTTGAGGAAGGGGAGATGAGGAAGGTACTCTTGATTGGATTAGCTTGCTCACACCCTGATTCAATGGCAAGACCTACTATGAGGTGTGTGGTTCAGATGCTGCTGGGTGAGGCTGAAGTGCCTATTGTCCCTAGAGCCAAGCCATCTACTAGTTACAGTACTTCTCAACTCTTAATGAACTTGCAAGATAGTGATACTGACTGTAAGAATGGTATGATCACAATCTCTACCTCTTCATCAGAGAACAGCTCCAATGGCAAAGATATAGTCTGA 2046 0.5015 MNIHPHFPMSPLQTPFFITFFFLCCLNASSSIFATTQFDFATLTMSTLKLLGDAHLNNNTVSLTGDPAVPNSAAGRALYSAPVRFRQPGTPSPASFSTFFSFSVTNLNPSSVGGGLAFVISPDSSAVGDPGGFLGLQTAAGGTFLAVEFDTLMDVEFSDVNGNHVGLDLNSVVSTQVSDLGTIGVDLKSGDSVNAWIEYDGNAKGLRVWVSYSNLRPKDPILKVDLDVGMYVDDFMYVGFSGSTQGSTEVHSVEWWSFNSSFDSAAAPAAATSVQKERKSSKKSTVGAVAGVVTAGAFVLALFAGALIWLYSNKVKYYVKKLDHSIESEIIRMPKEFSYKELKLATKGFSANRVIGHGAFGTVYKGVLPESGDIVAVKRCNHSGQGKNEFLSELSIIGSLRHRNLVHLQGWCHEKGEILLVYDLMPNGSLDKALYESRMALSWPHRLKILLGVSSVLAYLHHECENQVIHRDIKTSNIMLDEGFNARLGDFGLARQTEHDKSPDATVAAGTMGYLAPEYVLTGRATEKTDVFSYGAVVLEVASGRRPIEKDDDAAAGNGKVGISSNLVEWVWSLHQDGKLLTAADPRLEGEFEEGEMRKVLLIGLACSHPDSMARPTMRCVVQMLLGEAEVPIVPRAKPSTSYSTSQLLMNLQDSDTDCKNGMITISTSSSENSSNGKDIV* 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1230 681 SUPERFAMILY Protein kinase-like (PK-like) 331 656 IPR011009 -
Gso13g1230 681 SMART serkin_6 349 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g1230 681 SUPERFAMILY Concanavalin A-like lectins/glucanases 35 263 IPR013320 -
Gso13g1230 681 ProSitePatterns Serine/Threonine protein kinases active-site signature. 468 480 IPR008271 GO:0004672|GO:0006468
Gso13g1230 681 CDD lectin_legume_LecRK_Arcelin_ConA 38 262 IPR001220 GO:0030246
Gso13g1230 681 Pfam Protein kinase domain 351 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g1230 681 PANTHER - 30 273 - -
Gso13g1230 681 PANTHER - 281 675 - -
Gso13g1230 681 ProSitePatterns Protein kinases ATP-binding region signature. 355 378 IPR017441 GO:0005524
Gso13g1230 681 CDD STKc_IRAK 355 625 - -
Gso13g1230 681 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VIII.2 30 273 - -
Gso13g1230 681 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VIII.2 281 675 - -
Gso13g1230 681 Gene3D - 34 284 - -
Gso13g1230 681 ProSiteProfiles Protein kinase domain profile. 349 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g1230 681 Gene3D Transferase(Phosphotransferase) domain 1 425 632 - -
Gso13g1230 681 Pfam Legume lectin domain 36 266 IPR001220 GO:0030246
Gso13g1230 681 Gene3D Phosphorylase Kinase; domain 1 312 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1230 Gso-Chr13 27377293 27380046 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1230 16 659 Receptor kinase-like Gene Family AT3G53380 63.676 0.0 852
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Gso13g1230 Pkinase 1.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1230 - - gmx:100811281 1248.42