Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1223 ATGACAATGGAAGAAGAGTCCTTGGCAGCAGTCCCATTTGACAGAGCTATTGAACAGGCAATTGTATCTATCAAGAAAGGTGCATATTTACTTAAGTGTGGTCGTAGAGGAAAGCCGAAGCTCTGTCCTTTCAGACTTTCTCAGGATGAGAGAAATTTGATTTGGTACTCAGGACAACAGGAAAAGCATTTGCGATTGAGTGTAGTTACCAAAATCGTTCAAGGGCAGGAACATATAAGGTCCCAGAGGCAAAATGAGTCCGAAAAGGAGTGTCATTCATTTTCACTAATCTGTGCTAATGGTGAACGTTCTCTTGATCTGATATGCAAGGACAAAGCACAAGCTGCTTCTTGGTTTGTTGCCTTGAAAGCTGTGATTTCTAGGTGTCAGCATCCTAGAGCTTTTAGTAGTTTAAGAAGTTGCAAAGGGGTGCAGAGTTGTGTTAGTAGTCCTGCTGGAATCTTAAGAAGAAAGAAAAATCTTGGCCTTCTGGACGATACCTCTCAATTTACTCAGGTACATAGCGTATGTGCAAGTCCCACTATGTCACTTTCTGAAAGGTGCTTTTCTGATGGCTTGTCATGTACATCTGATAACTTTTATTCATCGGCATCTTTCCTCTCCAGCACTCATGGCGTAACAGATAGTTCAGTGGCAAGTTCTCCATACATTGATCCAGATATTCATGGCAACATTGAGTCAACCCGCATTGATAAGGAGCACAAGAAGAATTTGTCCGATAGCTATCTGATGCATTTTACCACCCCGCATGTAGGAAAAAGTAATGTGTTGAAGGATGTAATGATATGGGGTGGAGGGATTGGATGTCTTGTAGGGATTGTGAATGAAAGGTTTGTCCATCCTGGAATTTATTCTTTAGTGCCAAAGTTACTAGAATCCACTGCAATGTTAGATGTTCATAACATAGCTTTAGGAGGAAAACATGCTGCCTTAGTTACAAAACAAGGGGAAGTGTTTTGCTGGGGTCAAGGGAAGTGGGGAAGACTGGGGCAAAAAATTGATATGGACATTAGCTCCCCCAAAATAGTTGATTCTCTTAATGGTCTTCATGTAAAAACTGTTGCTTGTGGTGAGTATCATACATGTGCTTTGACAGATTCTGGTGAAGTATATACTTGGGGGAACGATGTTTGTTGTGCAGATTTATTGAATGAAGGAAGAACTAGAAGTCAGTGGATACCACAAAGACTTGGTGGACCCTTAGATGGTATTAGTATCTCAAGTGTTGCTTGTGGGGAATGGCATACTGCAATTGTCTCTAGTTGTGGGAGGTTATTTACTTATGGAGATGGTACATTTGGGGTTCTTGGCCATGGCGATCTTCGGAGCTATTCAAGTCCAAAAGAAGTTGAATCTCTTAATGGTCTGCGGGTGAGGTCTGCTGCTTGTGGATCATGGCATACAGCTGCTATTGTTGAAGTCATGTTAGACCGTTTTAGGTACAATAGTGCTAGTGGTAAGTTGTTTACATGGGGTGATGGAGATGAAGGGAGGCTTGGTCATGTAGATAATGGAAACAAGATTGTACCAACACGTGTTACACAACTTGTTGACTATGATTTTGTTCAAGTGTCATGTGGAAGAATGTTGACTGTAGCACTCACTAACATGGGCAAGGTTTTTGCAATGGGAAGTGCCAAATATGGACAACTAGGAAATCCACATGCCAGGGATAAAGTAGTGATTGTTGAAGGACAACTCAAACAAGAGTTTGTTAAAGTGATATCAACCGGTTCATATCATGTTGCTGTTTTGACTTCAGCAGGGAGTGTCTACACATGGGGCAGAGGTGAAAATGGCCAACTGGGGCTAGGTGATACTGAAGACAGATACACACCTTGTTTTGTTGAGGCTCTAAGAGACAGACAGGTAAATACTATTACTTGTGGTCCAAGCTTCACAGCTGCAATCTGTTTACACAAACCTATTTCTATTAGTGACCAGTCAACTTGTAGTGGTTGTAGGTTGCCATTTGGGTTCACAAGGAAGAAGCACAACTGCTATAATTGTGGTCTTTTGTTCTGTCGTGCTTGTAGTAGTAAAAAAATTACAAACGCACCTCTAGCCCCTAGTAAGAGCAAGGCTTTTCGAGTTTGTGATCAGTGTTTCGATAAACGACAGGGGGGTGCCCATTCAGTAATGGCATCAAAGTCCAGAAATTACAACACTCAGCAGGTGTTGAAGCATCAACACAAAATTTCTGATGTGACTGAAGATAGGGGAGAGACAACTGTGACACAAGGTCCTATGTTATCACTTGGTCAGTCATGTTACAGGAAAAGCATGCCAAGTGGACGAAAGGATTGGAAAAACCATCAAGAAATTCAGCAGGATGTAGAAGACAGTTCTTCTATGCTAGGTGGAATGCCACAGTGGGGGCAAGTTCCATGCCCTGCCATGTTTCAAATAAATTGTACAGAAAATCCAGTTGTTCATGTTTCTTCATCCAAAAATAAATTAGCCACAGTTTCTCCCTTTAATGTGGAATCTACAGCATATAACTTCTCCTCCAATGTGGAGACTGATACAACAAAGTCTGACAAGGTGCTCCTTGAAGAAGTTCATAGGCTTAGAGCTGAGGCTAAGAGACTTGAAGAGCAGTGTGAGCTCAAAAACCGTAAAATACAAGAGTGTCGACAAAAAATTGAGGAGAGTTGGTTTGTAGCAAGAGAGGAAGCTGCTAAGTGTAAGGCAGCAAAAGAGGTCATAAAAGCTTTAGCACTGAGGCTTCATACAATATCAGGAAAAGATAACGTTGGACAAGAAGGAAAAGTTGGGCCAAATGAATTTGTGCCTAACGTGGCACCCATACATACAGAAATGAAGAGTCCACGAGATGTCAGCGTGGATAGTCTATCCAATTCCCCTATAGTATTCTCTGACACATTAAAATCCAAATTTGGGAGAAGTTTGTTCCCCAAAATTGATAATTCTAACATAAATAGAGCAGAATCTCAACAAGACAACAATATTGATGGCTTGAAGGCTGAATGGGTAGAACAATACGAGCTCGGTGTTTACATCACATTTACAACTTTGCCATGCGGGAAAAAAGGCCTTAAGCGAGTGAGATTTAGTCGAAAGCGATTCTCAGAGAAGGAAGCTGAAAAATGGTGGGAAGAGAATCAAGTGACGGTGTATCACAAGTATGGGATTGAAGGATATATAAATAATAACACTAGCCAAAGTCAGGTGAAAGGCTAA 3225 0.4136 MTMEEESLAAVPFDRAIEQAIVSIKKGAYLLKCGRRGKPKLCPFRLSQDERNLIWYSGQQEKHLRLSVVTKIVQGQEHIRSQRQNESEKECHSFSLICANGERSLDLICKDKAQAASWFVALKAVISRCQHPRAFSSLRSCKGVQSCVSSPAGILRRKKNLGLLDDTSQFTQVHSVCASPTMSLSERCFSDGLSCTSDNFYSSASFLSSTHGVTDSSVASSPYIDPDIHGNIESTRIDKEHKKNLSDSYLMHFTTPHVGKSNVLKDVMIWGGGIGCLVGIVNERFVHPGIYSLVPKLLESTAMLDVHNIALGGKHAALVTKQGEVFCWGQGKWGRLGQKIDMDISSPKIVDSLNGLHVKTVACGEYHTCALTDSGEVYTWGNDVCCADLLNEGRTRSQWIPQRLGGPLDGISISSVACGEWHTAIVSSCGRLFTYGDGTFGVLGHGDLRSYSSPKEVESLNGLRVRSAACGSWHTAAIVEVMLDRFRYNSASGKLFTWGDGDEGRLGHVDNGNKIVPTRVTQLVDYDFVQVSCGRMLTVALTNMGKVFAMGSAKYGQLGNPHARDKVVIVEGQLKQEFVKVISTGSYHVAVLTSAGSVYTWGRGENGQLGLGDTEDRYTPCFVEALRDRQVNTITCGPSFTAAICLHKPISISDQSTCSGCRLPFGFTRKKHNCYNCGLLFCRACSSKKITNAPLAPSKSKAFRVCDQCFDKRQGGAHSVMASKSRNYNTQQVLKHQHKISDVTEDRGETTVTQGPMLSLGQSCYRKSMPSGRKDWKNHQEIQQDVEDSSSMLGGMPQWGQVPCPAMFQINCTENPVVHVSSSKNKLATVSPFNVESTAYNFSSNVETDTTKSDKVLLEEVHRLRAEAKRLEEQCELKNRKIQECRQKIEESWFVAREEAAKCKAAKEVIKALALRLHTISGKDNVGQEGKVGPNEFVPNVAPIHTEMKSPRDVSVDSLSNSPIVFSDTLKSKFGRSLFPKIDNSNINRAESQQDNNIDGLKAEWVEQYELGVYITFTTLPCGKKGLKRVRFSRKRFSEKEAEKWWEENQVTVYHKYGIEGYINNNTSQSQVKG* 1075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1223 1074 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 468 478 IPR000408 -
Gso13g1223 1074 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 596 647 IPR000408 -
Gso13g1223 1074 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 493 544 IPR000408 -
Gso13g1223 1074 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 430 481 IPR000408 -
Gso13g1223 1074 SMART fyve_4 646 715 IPR000306 GO:0046872
Gso13g1223 1074 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 323 374 IPR000408 -
Gso13g1223 1074 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 652 714 IPR017455 -
Gso13g1223 1074 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 16 1060 - -
Gso13g1223 1074 PANTHER F12P19.9 PROTEIN 16 1060 - -
Gso13g1223 1074 CDD PH_PLC_plant-like 15 127 - -
Gso13g1223 1074 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 375 429 IPR000408 -
Gso13g1223 1074 Pfam FYVE zinc finger 654 712 IPR000306 GO:0046872
Gso13g1223 1074 PRINTS Chromosome condensation regulator RCC1 signature 306 319 IPR000408 -
Gso13g1223 1074 PRINTS Chromosome condensation regulator RCC1 signature 325 341 IPR000408 -
Gso13g1223 1074 PRINTS Chromosome condensation regulator RCC1 signature 375 391 IPR000408 -
Gso13g1223 1074 PRINTS Chromosome condensation regulator RCC1 signature 416 432 IPR000408 -
Gso13g1223 1074 PRINTS Chromosome condensation regulator RCC1 signature 432 446 IPR000408 -
Gso13g1223 1074 PRINTS Chromosome condensation regulator RCC1 signature 534 552 IPR000408 -
Gso13g1223 1074 PRINTS Chromosome condensation regulator RCC1 signature 591 612 IPR000408 -
Gso13g1223 1074 Coils Coil 854 888 - -
Gso13g1223 1074 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 655 713 IPR013083 -
Gso13g1223 1074 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 545 595 IPR000408 -
Gso13g1223 1074 Gene3D - 16 133 IPR011993 -
Gso13g1223 1074 SUPERFAMILY RCC1/BLIP-II 265 648 IPR009091 -
Gso13g1223 1074 Pfam Transcription factor regulating root and shoot growth via Pin3 1002 1057 IPR013591 -
Gso13g1223 1074 ProSiteProfiles BRX domain profile. 1003 1058 IPR013591 -
Gso13g1223 1074 SUPERFAMILY PH domain-like 16 126 - -
Gso13g1223 1074 Gene3D - 243 485 IPR009091 -
Gso13g1223 1074 Gene3D - 486 654 IPR009091 -
Gso13g1223 1074 Pfam Regulator of chromosome condensation (RCC1) repeat 323 371 IPR000408 -
Gso13g1223 1074 Pfam Regulator of chromosome condensation (RCC1) repeat 596 644 IPR000408 -
Gso13g1223 1074 Pfam Regulator of chromosome condensation (RCC1) repeat 430 478 IPR000408 -
Gso13g1223 1074 Pfam Regulator of chromosome condensation (RCC1) repeat 492 541 IPR000408 -
Gso13g1223 1074 Pfam Regulator of chromosome condensation (RCC1) repeat 374 425 IPR000408 -
Gso13g1223 1074 SUPERFAMILY FYVE/PHD zinc finger 653 727 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1223 Gso-Chr13 27291528 27302175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1223 999 1062 Major Intrinsic Protein MIP AT1G31880 45.312 2.33e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1223 - - gmx:100794953 2178.67