Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1222 ATGGCGATTCAAGATCAAAATGGATTTTACAGATCACAGGGTGGTCCTCCAGAAGGAGGTGGTGTATCTTTGAGTTCTGGGCATTCTGTCACACATATTCAACTTAATGACCAGTTTTCTTGTGGGAATGACTATGCTCTGAAGGTAAGGAAGCCGTATACTATCACCAAACAGAGAGAGCGATGGACGGATGAAGAACATAAGAAGTTCCTTGAAGCTTTAAAGCTGTATGGACGGGCTTGGCGGCGTATTGAAGAACATGTTGGCACAAAGACTGCTGTTCAGATTCGAAGTCATGCTCAGAAGTTTTTTTCTAAGGTTCTTCACGATCCTACTGGGAACAATACAAACACAGTGGAGTCAATTGAAATTCCTCCTCCAAGACCGAAACGAAAGCCGATGCATCCTTACCCTCGTAAACTAGTTGAGACCCCAAATAAGGAAATTTCGATCCCAGAACAACCTATGAAGTCTAATTCTCTGAAGTCGTCAGACTTTGATCAAGAAAACCAATCTCCAAAATCAGTATTATCAGGAGTTGGTTCAGACAGCCTTGGTTCCTCTGATTCAGACACACCAAATGGAAGTTTGTCGCCCATGTCATCCATTAGTGGCTTCCATACAAGCAGTTTTACACGTGCCAAACCCAAAACAACAACATCTGAGGAAGAAGCTGGGATGGACACTGATTCAACTCATGATGAGAAACCTCTTATGAAATTCAAGCTTCCCCCAAATGGATGTGTTTCCATCAAAGAAGACAACACAGCAGAAGAATCTTCCGGTCGGACTTTCAAACTCTTTGGAATGACTCTATTTGTAACAGACACCTGCAAACCATCTCCAACAATCGAGGAATGCTAA 864 0.4271 MAIQDQNGFYRSQGGPPEGGGVSLSSGHSVTHIQLNDQFSCGNDYALKVRKPYTITKQRERWTDEEHKKFLEALKLYGRAWRRIEEHVGTKTAVQIRSHAQKFFSKVLHDPTGNNTNTVESIEIPPPRPKRKPMHPYPRKLVETPNKEISIPEQPMKSNSLKSSDFDQENQSPKSVLSGVGSDSLGSSDSDTPNGSLSPMSSISGFHTSSFTRAKPKTTTSEEEAGMDTDSTHDEKPLMKFKLPPNGCVSIKEDNTAEESSGRTFKLFGMTLFVTDTCKPSPTIEEC* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1222 287 Pfam Myb-like DNA-binding domain 59 102 IPR001005 -
Gso13g1222 287 CDD SANT 61 104 IPR001005 -
Gso13g1222 287 SMART sant 58 106 IPR001005 -
Gso13g1222 287 MobiDBLite consensus disorder prediction 151 216 - -
Gso13g1222 287 MobiDBLite consensus disorder prediction 217 240 - -
Gso13g1222 287 MobiDBLite consensus disorder prediction 108 122 - -
Gso13g1222 287 MobiDBLite consensus disorder prediction 125 142 - -
Gso13g1222 287 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Gso13g1222 287 PANTHER PROTEIN REVEILLE 7-RELATED 27 284 - -
Gso13g1222 287 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 57 106 IPR006447 GO:0003677
Gso13g1222 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 54 108 IPR017930 -
Gso13g1222 287 MobiDBLite consensus disorder prediction 108 241 - -
Gso13g1222 287 ProSiteProfiles SANT domain profile. 57 108 IPR017884 -
Gso13g1222 287 PANTHER SWI/SNF COMPLEX-RELATED 27 284 - -
Gso13g1222 287 MobiDBLite consensus disorder prediction 1 27 - -
Gso13g1222 287 Gene3D - 61 107 - -
Gso13g1222 287 SUPERFAMILY Homeodomain-like 53 106 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1222 Gso-Chr13 27258600 27262073 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso13g1222 Myb_DNA-binding 5.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1222 - - gmx:778058 548.895