Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1221 ATGCAGTTTGATTTTTATTCATTGAAACTACGACGTTTTGCATTGGGCAAAAAAAAAAAATACAGCAGGGGTCAAGAAAATCCTAATCCTCTTGGGCTCTTTGTGTCTGAAGCTTCACTCGAAAGTGGAAACACTGCTCTCATCGACTCGAAAGCGGTTTGCGGTTTCCGTCATCGGCGAGACGCCGCCGCCGTCTGGAATTGGAAGACCGTCGCAGTAGTCGCACCATCGCAGCACGCATTGGAAACGGAAATGGGTTCTTGTGCTACATCATCTGTTCTGACTAATCAATTTATTCCGTGGTCTACAACCAATACTGAATCTCCCTTGGACTCCAAATTGGGCGTCATATTTTATAAAATGTACAGAAATACAAACAAAAGACAACTCAGTCTCTCTTTTGCTTGGGATAGTTATAAAATCAGGAGTATTGGTGCGATTAAATCATACAAAGATGTATCTTATTTTCAAACCGAACAAGTAGGATCATGGGAAGATCCAGATACTGGAAGTGACAGTGAGTGTGATGATGAAGAATATGAGGAAGTTGAAGACGAGAACTTTGGATTTGAAAGTGATTCAGAAGAGGAAGGGATGAAGGCTTCAGTTGCTACTGATGTTAATATAACTTCAGGGGACAACTATGAAGAACTTATTAAGAAAGAGATTGAACAGCTTCTGGAACCGGAAGAAAGAGCAATATTGCAACAGAATATTACTCCTAACTTGGAAAAAATATCAACTGAAAAATGGAGCCCGCTGCACACTCTTGTGCTTTCAATGCAGATGAGTTGTGTGGATAAGCTTCTTGAAAATGGTGTTGATATTGATTTACCTGATAAGGAAGGTCTTACTGCACTTCATAAGGCAATTACGGGTAAAAAAGAAGCTGTGATTAGTCATCTTTTACGAAGAGGTGCAAGTCCTCATGTTAAGGATAAGGATGGAGCCGCTCCACTTCATTATGCAGTTCAAGTTGGTGCCAAGATGACTGTGAAATTATTGATCAAGTACAAGGCTGATGTCAATGTTGAAGATAATGAAGGTTGGACCCCCTTGCACATTGCCATTCAAAGCAGAAATAGAGATATAGCAAAAATTTTGTTAGTCAATGGTGCTGATAAGACTAGGAAAAATAAGGACGGAAAAACAGCCCTGGATCTAAGCTTATGTTATGGGAAAGATTTCAAGTCTTATGACCTTGCCAAATTACTGAAGACGGTTCCAGCTGACAGTTATCTATGA 1245 0.4008 MQFDFYSLKLRRFALGKKKKYSRGQENPNPLGLFVSEASLESGNTALIDSKAVCGFRHRRDAAAVWNWKTVAVVAPSQHALETEMGSCATSSVLTNQFIPWSTTNTESPLDSKLGVIFYKMYRNTNKRQLSLSFAWDSYKIRSIGAIKSYKDVSYFQTEQVGSWEDPDTGSDSECDDEEYEEVEDENFGFESDSEEEGMKASVATDVNITSGDNYEELIKKEIEQLLEPEERAILQQNITPNLEKISTEKWSPLHTLVLSMQMSCVDKLLENGVDIDLPDKEGLTALHKAITGKKEAVISHLLRRGASPHVKDKDGAAPLHYAVQVGAKMTVKLLIKYKADVNVEDNEGWTPLHIAIQSRNRDIAKILLVNGADKTRKNKDGKTALDLSLCYGKDFKSYDLAKLLKTVPADSYL* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1221 414 Pfam Ankyrin repeats (3 copies) 298 379 IPR002110 GO:0005515
Gso13g1221 414 Gene3D - 215 316 IPR036770 -
Gso13g1221 414 Gene3D - 317 397 IPR036770 -
Gso13g1221 414 ProSiteProfiles Ankyrin repeat profile. 282 314 IPR002110 GO:0005515
Gso13g1221 414 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 181 407 - -
Gso13g1221 414 ProSiteProfiles Ankyrin repeat profile. 249 281 IPR002110 GO:0005515
Gso13g1221 414 ProSiteProfiles Ankyrin repeat region circular profile. 348 374 - -
Gso13g1221 414 ProSiteProfiles Ankyrin repeat region circular profile. 315 347 - -
Gso13g1221 414 ProSiteProfiles Ankyrin repeat region circular profile. 282 314 - -
Gso13g1221 414 ProSiteProfiles Ankyrin repeat profile. 315 347 IPR002110 GO:0005515
Gso13g1221 414 SMART ANK_2a 348 377 IPR002110 GO:0005515
Gso13g1221 414 SMART ANK_2a 282 311 IPR002110 GO:0005515
Gso13g1221 414 SMART ANK_2a 249 278 IPR002110 GO:0005515
Gso13g1221 414 SMART ANK_2a 315 344 IPR002110 GO:0005515
Gso13g1221 414 SMART ANK_2a 381 414 IPR002110 GO:0005515
Gso13g1221 414 PANTHER ANKYRIN REPEAT AND SOCS BOX PROTEIN 3 181 407 - -
Gso13g1221 414 SUPERFAMILY Ankyrin repeat 241 405 IPR036770 -
Gso13g1221 414 ProSiteProfiles Ankyrin repeat profile. 348 380 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1221 Gso-Chr13 27243581 27248541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1221 234 374 Ion Channels AT2G25600 31.206 3.08e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1221 - - gsj:114380843 792.341