Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1202 ATGACAAACAATATTGGTAAGGACCTTATCCATTATAAAGTTATTGACCCCAATGATGATCCTATAAACCCCAAACCTGGAACCTTGAGGTATGGAGCTTCTGTAATTCAAGGTAAAGTGTGGATCACATTCCAAAGAGACATGCACATTAAACTTGAGAGACCTCTTCTTATTAGTAGTTTTACTACCATTGATGGTAGAGGTGTTAATGTCAACATTGCTGATAATGCATGCTTAATGATCTTTAAGGCAACCAACGTAATCATCCATGGCATTCGGGTTCATCATTGCAAACCTCAAGCCCCAGGAATTGTAATGGGGCCTGAAGGCAAGGTGATTCCTTTGGGCCATGTAGATGGTGATGCAATTCGATTAGTTACAGCCTCAAAGATTTGGATTGATCATAACACACTTTATAATTGTCAAGATGGTCTACTTGATGTAACGCGAGGTTCCACTGATGTAACTGTATCCAATAACTGGTTTAGAAACCAAGACAAGGTTATGCTTCTTGGGCATGATGATGGATATGTGAGAGACCAGAACATGAAGGTTACTATTGTGTACAACCACTTTGGACCGAATTGTAATCAACGCATGCCAAGGATTCGCCATGGATATGCACATGTAGCCAACAACCTTTACTTAGGATGGGTGCAATATGCCATTGGTGGAAGCATGGGACCTAGCCTCAAAAGTGAAGCTAACCTCTTTATAGCACCAACAATAGGGAGTAAAGAGGTAACATGGAGAAAGAGTACTCAAAAAAATGGAAACACATGGGAATTTCATTCAGTGAAAGATGCTTTTGAAAATGGAGCCTCCTTCACAATAACAAAAGGAGGACGTGTGTCAAAGCCGAATTATAGCAAGAAACAATACTTTAAAGTTGTTGATGTCAAATTTGTGAGATCATTAACACACTCATCAGGTGTATTACGATGCAGTAAAACTTCTATATGCTGA 966 0.3944 MTNNIGKDLIHYKVIDPNDDPINPKPGTLRYGASVIQGKVWITFQRDMHIKLERPLLISSFTTIDGRGVNVNIADNACLMIFKATNVIIHGIRVHHCKPQAPGIVMGPEGKVIPLGHVDGDAIRLVTASKIWIDHNTLYNCQDGLLDVTRGSTDVTVSNNWFRNQDKVMLLGHDDGYVRDQNMKVTIVYNHFGPNCNQRMPRIRHGYAHVANNLYLGWVQYAIGGSMGPSLKSEANLFIAPTIGSKEVTWRKSTQKNGNTWEFHSVKDAFENGASFTITKGGRVSKPNYSKKQYFKVVDVKFVRSLTHSSGVLRCSKTSIC* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1202 321 PANTHER PECTATE LYASE 1 318 - -
Gso13g1202 321 PANTHER PECTATE LYASE 18-RELATED 1 318 IPR045032 GO:0030570
Gso13g1202 321 PRINTS Pollen allergen Amb family signature 18 43 IPR018082 -
Gso13g1202 321 PRINTS Pollen allergen Amb family signature 55 71 IPR018082 -
Gso13g1202 321 PRINTS Pollen allergen Amb family signature 119 140 IPR018082 -
Gso13g1202 321 PRINTS Pollen allergen Amb family signature 199 218 IPR018082 -
Gso13g1202 321 PRINTS Pollen allergen Amb family signature 221 240 IPR018082 -
Gso13g1202 321 PRINTS Pollen allergen Amb family signature 261 285 IPR018082 -
Gso13g1202 321 PRINTS Pollen allergen Amb family signature 292 315 IPR018082 -
Gso13g1202 321 SMART amb_all 47 244 IPR002022 -
Gso13g1202 321 Pfam Pectate lyase 58 238 IPR002022 -
Gso13g1202 321 Gene3D - 4 314 IPR012334 -
Gso13g1202 321 SUPERFAMILY Pectin lyase-like 11 277 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1202 Gso-Chr13 26909690 26911053 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1202 1 248 Polysaccharide Lyase AT5G09280 72.581 3.46e-144 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1202 K01728 - gmx:100780437 624.394