Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1200 ATGGCTTCTTCTAATAGACACTGGCCAAGCATGTTCAAGTCCAAGCCCTGCAACCCTCACCACCAATGGCAGCATGACATCAACTCCTCCCTCATCTCCACTAGCTGCCACAGAAGCCCTTACTCTTCCGGAGGAGGTGGTGGTTGTGAGGAGAGAAGTCCAGAGCCAAAGCCAAGGTGGAACCCAAAACCTGAGCAAATCCGAATACTGGAGGCTATATTCAACTCTGGAATGGTGAATCCTCCGAGGGATGAGATAAGGAAGATAAGGGCACAGTTGCAAGAGTATGGGCAAGTGGGTGATGCCAATGTCTTCTATTGGTTCCAGAACCGCAAGTCCAGGAGCAAGCACAAGCTTCGCCATCTCCAAAACTCATCATCAAAGAACCTGAACCACCATCACCACCTTGTTGATCAAAATCATCATACTCCCACTTCTCTCCCTCAAACCGCTACTACTGCACCCTCATCCTCATCATCTTCATCGTCTGAGAAATCTTCCCCAAAAGAGCTTATAATACCTACCACCAAGGTGTTCTCCATTGGATTCTCCGATGTGATGCCTAATTCTCCCACTGCTTCTGTGAACCAGACCTATTTTCAGACCCGAATTAATGAGTCCATTATGCTTCCGTCACCACCACCACCAGTTGAGGCTTTCTTCTTCCCAGTGCAACAACAACATCATGGAGTAACATCATCATCACAAGGGTTTTGCTTCTCTGAGCTGTCCAATGTTGTTCATCAACACAACAGCGTTGGTCCTTGCACTAGCCTCTTGCTTAGTGAGATCGTAGGCCATGGTGTTGCTTCTGCTTCTGCCTCAAAGAAAGACAAGTCTCAGGTGAAAATAATGCACCAGCCCTCACTGCTTAATTTCTGTGTCACCACTCCAACAACAACAGCTCCTTCTACTACAACCACTGTTGTTGTACCTCCCATCACTACTACCTCCTCTACTACTATTCCATCCCCCCTCATGCATCAACTTCAAGGTATTGGAGATCCAGGTGGTGCGGCGAGATCAATGGTGTTCATTAACGATGTGGCATTCGAGGTGGCTTTGGGGCCCTTCAATGTGCGTGAAGCCTTTGGAGATGATGCTGTGCTCATCCATGCCAGCACTGGTCAACCTGTGCTAACAAACCAATGGGGTCTCACTCTTCATTCACTCCAGCATGGCGCTTGTTATTATTTGATATAG 1203 0.4788 MASSNRHWPSMFKSKPCNPHHQWQHDINSSLISTSCHRSPYSSGGGGGCEERSPEPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRHLQNSSSKNLNHHHHLVDQNHHTPTSLPQTATTAPSSSSSSSSEKSSPKELIIPTTKVFSIGFSDVMPNSPTASVNQTYFQTRINESIMLPSPPPPVEAFFFPVQQQHHGVTSSSQGFCFSELSNVVHQHNSVGPCTSLLLSEIVGHGVASASASKKDKSQVKIMHQPSLLNFCVTTPTTTAPSTTTTVVVPPITTTSSTTIPSPLMHQLQGIGDPGGAARSMVFINDVAFEVALGPFNVREAFGDDAVLIHASTGQPVLTNQWGLTLHSLQHGACYYLI* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1200 400 ProSiteProfiles 'Homeobox' domain profile. 53 118 IPR001356 GO:0003677
Gso13g1200 400 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 400 IPR044557 GO:0003700|GO:0050793
Gso13g1200 400 SMART HOX_1 55 122 IPR001356 GO:0003677
Gso13g1200 400 MobiDBLite consensus disorder prediction 138 169 - -
Gso13g1200 400 Gene3D - 57 123 - -
Gso13g1200 400 Pfam Homeodomain 57 117 IPR001356 GO:0003677
Gso13g1200 400 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 400 - -
Gso13g1200 400 MobiDBLite consensus disorder prediction 141 169 - -
Gso13g1200 400 MobiDBLite consensus disorder prediction 34 63 - -
Gso13g1200 400 CDD homeodomain 56 118 IPR001356 GO:0003677
Gso13g1200 400 SUPERFAMILY Homeodomain-like 53 121 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1200 Gso-Chr13 26887326 26890645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1200 1 400 Wox Gene Family AT2G33880 45.199 1.47e-92 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Gso13g1200 Homeodomain 1.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1200 - - gmx:100785125 696.427