Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1197 ATGGACCAACAACATAAAGTGATTCCTCTGCTGCTGCTTCTTTTCCAAGTTCTGCTTGTAGCATCACAGACAGATAGTCAAGATTATTCTGGCCTAAATTCTCTTACGGAATCCTGGAGTAACAAGCCACAAAATTGGGTGGGTCCAGATCCTTGTGGCAGTGGATGGGATGGAATTCGTTGCAGCAATTCAAGAATTACCCAATTGAGACTGCCAGGCTTGAATTTGGGAGGCCAGCTGTCTTCGGCAATTCAGTCTTTATCTGAACTAGATACTCTGGATCTTTCTTACAACACAGGCTTGACAGGAACAGTTCCACAAGAAATTGGGAATTTGAAAAAGCTAAAATCCCTATCATTGGTTGGTTGTGGTTTCTCTGGTCGTATTCCGGATTCAATAGGATCTTTAAAGCAGCTGACATTTCTAGCACTTAATTCTAATAATTTCAGTGGAACTATACCACGGTCTCTTGGCAATCTATCAAATGTTGATTGGCTTGATCTTGCTGAAAACCAGCTTGAAGGGACTATTCCTGTCTCTGATGACCAAGGAAGACCAGGCCTTGACCTTCTCCTTAAGGCACACCACTTTCATATGGGGAGCAATAAGCTCACTGGTACAATACCAGAAAAACTTTTTAACTCCAATATGATTCTCGAACACGTGCTTTTCGACCACAATCAACTAGAGGGTGGCATTCCTAGATCCCTTAGTACTGTGAGCACATTGGAAGTTGTGCGCTTTGATAAGAATGGATTAACTGGGGGAGTGCCTGCAAACTTAAACAAACTCGGAAAACTAAGTGAGATCTATTTATCTCACAATAGTCTGAATGGCTCTCTGCCCGATTTTTCTGGAATGAATAGTCTCACCTATGTGGACCTGAGTGACAATGATTTCAATGCTTCTGATATTCCCTCATGGGTTACAACTCTGCCAGGACTAACAACAGTAATACTTGGGCAGAACCGGCTCGGTGGCGCATTAAATCTCAGTCGCTACAGCAGTAGTCTGCAACTCATGAATTTGGAAGATAATGAAATAACAGAACTTGACCCAGAAAACAACTCACCAACTTTTGAGCTAAGACTAGCTAACAACCCACTTTGTCGTGAAAGTGGAGCTTCTGAAAGGAGTTACTGCAAAGTTCCAGTACCCAATCCCTCATTTTATTCAACACCAACAAATAATTGTTTACCTTCACCTTGCGGTTCTGATCAGGTTTCGAGCCCAAATTGTAAATGTGCATTTCCCTATTCTGGACTTCTTATATCAAGAGCTCTTAGTTTCTCAAACTTCAGTAATGCAAGTTACTATAGGGAGCTTGAGCAGTCTCTGATGGATACTTTTCGAAACCAAAGCATTCCAGTGGATTCAGTTTCTCTTAGTAACCCCTTCAGGAATACTATTGATAATTTTGAATTGACTCTGGACGTCTTCCCTTCGCAAACCGATCGCTTCAACACAACTGGAGTTTTAACTATTGCTTTTCTGCTAAGCAACCAAATTTACAAACCCCCAGAATTCTTCTCCCCTTACATCTTCAAGGGTGCCAATTATGAATACTATGGAGGAGAACCAAAAGGATCAAAGTCATCATCACATGTAGGGGTTATAGTTGGTGCTGTAGTTGCTGTTGTGGTCTTTGTTGTTCTAGCATTCTTTGCAGGGATGTATGCCCTTCGCCAGAAAAGAAGAGCAAGAAGATCTGCAGAGTTGAACCCTTTTGCAAATTGGGAACAGAATACGAATAGTGGCACTGCTCCTCAGTTGAAAGGAGCACGATGGTTTTCTTTTGATGATCTAAGGAAATACACCAGCAACTTCTCAGAAACCAATACTATTGGATCTGGAGGCTATGGAAAGGTTTATCAAGGAAATCTTCCCTCTGGGGAGCTGGTTGCCATCAAACGGGCTGCAAAAGAGTCTATGCAGGGTGCTGTTGAATTTAAAACTGAGATCGAACTTCTATCAAGGGTCCATCATAAGAATCTCGTCGGTCTTGTGGGTTTCTGTTTTGAGAAGGGTGAACAAATGCTGGTGTATGAGCACATTCCAAATGGCACTTTAATGGATAGTCTCTCAGGAAAGTCTGGCATCTGGATGGATTGGATAAGGAGGCTTAAAGTAGCATTAGGTGCAGCCAGGGGTCTGGCCTATCTTCATGAACTTGCTGATCCACCTATCATACACAGGGACATAAAATCAAGCAATATCCTACTTGATCATCACCTCAATGCAAAAGTTGCAGATTTTGGTCTCTCTAAACTTCTTGTTGATAGTGAAAGGGGCCATGTCACTACTCAAGTGAAAGGGACAATGGGTTACTTGGATCCTGAATATTACATGACCCAGCAGTTGACTGAAAAGAGTGATGTATATAGCTTTGGAGTGCTAATGCTAGAACTAGCAACAGCAAGAAGGCCAATAGAGCAAGGAAAGTATATTGTAAGAGAGGTAATGAGGGTAATGGACACATCAAAAGATTTATACAACCTTCATTCCATTCTAGACCCAACCATAATGAAAGCAACAAGACCAAAAGGTTTAGAAAAGTTTGTGATGTTGGCAATGAGATGCGTCAAAGAATATGCAGCAGAGAGGCCTACAATGGCTGAGGTTGTAAAAGAGATCGAGAGCATGATTGAGCTTGTTGGATTGAACCCCAATTCTGAATCAGCTACAACATCAGAAACTTATGTGGAAGCAGGTGTAGGAAATGCCCAACATCCTTACCGGGAAGAAGATTTTAGCTATAGTGGAATTTTTCCATCCACAAGGGTAGAACCCCAATAG 2796 0.4188 MDQQHKVIPLLLLLFQVLLVASQTDSQDYSGLNSLTESWSNKPQNWVGPDPCGSGWDGIRCSNSRITQLRLPGLNLGGQLSSAIQSLSELDTLDLSYNTGLTGTVPQEIGNLKKLKSLSLVGCGFSGRIPDSIGSLKQLTFLALNSNNFSGTIPRSLGNLSNVDWLDLAENQLEGTIPVSDDQGRPGLDLLLKAHHFHMGSNKLTGTIPEKLFNSNMILEHVLFDHNQLEGGIPRSLSTVSTLEVVRFDKNGLTGGVPANLNKLGKLSEIYLSHNSLNGSLPDFSGMNSLTYVDLSDNDFNASDIPSWVTTLPGLTTVILGQNRLGGALNLSRYSSSLQLMNLEDNEITELDPENNSPTFELRLANNPLCRESGASERSYCKVPVPNPSFYSTPTNNCLPSPCGSDQVSSPNCKCAFPYSGLLISRALSFSNFSNASYYRELEQSLMDTFRNQSIPVDSVSLSNPFRNTIDNFELTLDVFPSQTDRFNTTGVLTIAFLLSNQIYKPPEFFSPYIFKGANYEYYGGEPKGSKSSSHVGVIVGAVVAVVVFVVLAFFAGMYALRQKRRARRSAELNPFANWEQNTNSGTAPQLKGARWFSFDDLRKYTSNFSETNTIGSGGYGKVYQGNLPSGELVAIKRAAKESMQGAVEFKTEIELLSRVHHKNLVGLVGFCFEKGEQMLVYEHIPNGTLMDSLSGKSGIWMDWIRRLKVALGAARGLAYLHELADPPIIHRDIKSSNILLDHHLNAKVADFGLSKLLVDSERGHVTTQVKGTMGYLDPEYYMTQQLTEKSDVYSFGVLMLELATARRPIEQGKYIVREVMRVMDTSKDLYNLHSILDPTIMKATRPKGLEKFVMLAMRCVKEYAAERPTMAEVVKEIESMIELVGLNPNSESATTSETYVEAGVGNAQHPYREEDFSYSGIFPSTRVEPQ* 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1197 931 CDD STKc_IRAK 615 881 - -
Gso13g1197 931 ProSiteProfiles Protein kinase domain profile. 609 882 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g1197 931 Gene3D Phosphorylase Kinase; domain 1 579 684 - -
Gso13g1197 931 ProSitePatterns Serine/Threonine protein kinases active-site signature. 729 741 IPR008271 GO:0004672|GO:0006468
Gso13g1197 931 SMART serkin_6 609 882 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g1197 931 Gene3D Transferase(Phosphotransferase) domain 1 685 897 - -
Gso13g1197 931 Gene3D Ribonuclease Inhibitor 185 281 IPR032675 -
Gso13g1197 931 PANTHER RECEPTOR-LIKE KINASE FAMILY PROTEIN, PUTATIVE-RELATED 2 914 - -
Gso13g1197 931 SUPERFAMILY Protein kinase-like (PK-like) 595 892 IPR011009 -
Gso13g1197 931 SUPERFAMILY L domain-like 42 375 - -
Gso13g1197 931 Gene3D Ribonuclease Inhibitor 17 184 IPR032675 -
Gso13g1197 931 PANTHER RECEPTOR-LIKE PROTEIN 55 2 914 - -
Gso13g1197 931 ProSitePatterns Protein kinases ATP-binding region signature. 615 641 IPR017441 GO:0005524
Gso13g1197 931 Pfam Protein kinase domain 610 876 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g1197 931 Gene3D Ribonuclease Inhibitor 282 385 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1197 Gso-Chr13 26855870 26864525 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1197 10 931 Receptor kinase-like Gene Family AT5G49760 52.892 0.0 922
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Gso13g1197 Pkinase 1.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1197 - - gmx:100786172 1831.61