Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1184 ATGGACTTGCAGTTGAAGCAATGGAGTAACCGGCATGAGTCAGAACAAGAACATTATTCCCCAAACATGCCAAAATTTCTCCCTCAACACCACCCACCACCATCTCCCTCTGCACTCCCTCTCTTTGTACCTGAACAACCCAACACCAAAGTCTGCACCCTGTCAGCATTTTCTGATTCCACACTACCTTCTGCTCCCAGATTTTCCAGGATGGAGAGTTGCTTCAGCTTTGCACAGTGGCAAGAGCTTGAGTTGCAGGCTCTGATATTCAGGTACATGCTGGCCGGTGCTCCTGTTCCTCCTGAGCTCCTTCTACCAATCAAGAAAAGCTTCCTTCAACTTTATAACCCTCCTTTGTTGGAATCAGGGTACTACTGGGGAAGAGCAGCGCTGGATCCGGAGCCGGGGCGGTGCCGGAGGACCGACGGCAAGAAGTGGCGGTGCTCGAAGGACGCGGTGGCGGGTCAGAAGTACTGCGACCGCCACATGCATCGTGGCCGAAACCGTTCAAGAAAGCCTGTGGAACAACGTGATGGATCTCTTTCTGCTATAGCCTCCGTTTCTTCTTCACCCTCTGCTTCATTTAATCTCCTTCACCTCAGTGAAAGTTCCTCTGGGGCCAAGAGTGACAACAAGAGCTTCTTTGAAAACCATGATCATGTGGATGGGGATGGAAATTCAGCCAAATCTGATGGCCATGTCTTGAGGCATTTCTTTGATGATTGGCCAAGGACACTGCAAGAGCCTGACAATGGTGAAAGCAATGGTTGCCAGAACAACAACTCAGGAACATGTCTTTCTATGTCAACACCAGGAATCACTTCCTCGGATGTGTCGTTGAAATTGTCCACTGGCCATGGAGAGGATGCGTGCCACGCGGCCTCAATGGGAGGACCACTTGCAGAGGCATTGAGATCATCCACCACCAGCTCCACTTCTTCACCAACCAGTGTTCTGCTTCAGTTGCCTCCTAGTTCTGCTTCTGAGGCTAGTTTCATTAGCACCTAA 1008 0.506 MDLQLKQWSNRHESEQEHYSPNMPKFLPQHHPPPSPSALPLFVPEQPNTKVCTLSAFSDSTLPSAPRFSRMESCFSFAQWQELELQALIFRYMLAGAPVPPELLLPIKKSFLQLYNPPLLESGYYWGRAALDPEPGRCRRTDGKKWRCSKDAVAGQKYCDRHMHRGRNRSRKPVEQRDGSLSAIASVSSSPSASFNLLHLSESSSGAKSDNKSFFENHDHVDGDGNSAKSDGHVLRHFFDDWPRTLQEPDNGESNGCQNNNSGTCLSMSTPGITSSDVSLKLSTGHGEDACHAASMGGPLAEALRSSTTSSTSSPTSVLLQLPPSSASEASFIST* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1184 335 SMART QLQ_2 73 109 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gso13g1184 335 Pfam QLQ 75 107 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gso13g1184 335 MobiDBLite consensus disorder prediction 1 38 - -
Gso13g1184 335 MobiDBLite consensus disorder prediction 248 263 - -
Gso13g1184 335 MobiDBLite consensus disorder prediction 302 335 - -
Gso13g1184 335 ProSiteProfiles QLQ domain profile. 74 109 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gso13g1184 335 PANTHER GROWTH-REGULATING FACTOR 3 11 335 - -
Gso13g1184 335 MobiDBLite consensus disorder prediction 162 185 - -
Gso13g1184 335 MobiDBLite consensus disorder prediction 1 19 - -
Gso13g1184 335 PANTHER - 11 335 IPR031137 GO:0005634|GO:0006351|GO:0032502
Gso13g1184 335 MobiDBLite consensus disorder prediction 290 335 - -
Gso13g1184 335 MobiDBLite consensus disorder prediction 244 263 - -
Gso13g1184 335 ProSiteProfiles WRC domain profile. 132 176 IPR014977 -
Gso13g1184 335 Pfam WRC 133 175 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1184 Gso-Chr13 26695948 26699096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1184 1 326 GRF Transcription Factor Family AT3G52910 43.299 4.51e-78 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Gso13g1184 WRC 1.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1184 - - gmx:100817197 642.114