Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1182 ATGCAGAAACGGAGGGCTGGGAGGAAGAAGTTCCACGAGACGCGTCACCCGGTCTACAAGGGGGTGAGGCAGAGGAACGGGAAGTGGGTGTGCGAGCTGCGACAACCTAACAACAAAAACGCGCGCGTGTGGCTCGGAACATTCACGCACCCCGACATGGCTGCTATAGCGTACGATGTTGCCGCCTTGGCTTTCAAGGGCGACAATGCTTCCTTAAACTTCCCGCACGCCGCCACCTCGTTGCCGCGCCTCAACTCGCGGACGTGTTCCGTTAGGGCCATTCAGTTTGCGGCGACGCAGGCGGCGGAGAAGCATTTTTCTTGTGCAGAGTCTCAACAACTCCAAAGGGAGGGTTCCTTAGAAGGATCAGGTTCTGGAAGCTTCTCTTTGGACGAAGACTCTTCGGAGTTTTCGTCAAAAGAAGGAGGTTCTGAAAGGTTCTTTTGGGATGAAGAGGAGGTGTTTAACATGCCGGAGTTGCTGAACAGCATGGCCGAAGCGTTGATTATCACACCGCCGGCATTGGAAAGAGGGTTCAATTGGGTTGGTGGGGAAACCACTGTGGATTTGACTCTGTGGTCAAACTGA 588 0.5442 MQKRRAGRKKFHETRHPVYKGVRQRNGKWVCELRQPNNKNARVWLGTFTHPDMAAIAYDVAALAFKGDNASLNFPHAATSLPRLNSRTCSVRAIQFAATQAAEKHFSCAESQQLQREGSLEGSGSGSFSLDEDSSEFSSKEGGSERFFWDEEEVFNMPELLNSMAEALIITPPALERGFNWVGGETTVDLTLWSN* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1182 195 SUPERFAMILY DNA-binding domain 18 76 IPR016177 GO:0003677
Gso13g1182 195 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Gso13g1182 195 PRINTS Ethylene responsive element binding protein signature 57 77 IPR001471 GO:0003700|GO:0006355
Gso13g1182 195 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 7 194 - -
Gso13g1182 195 MobiDBLite consensus disorder prediction 118 133 - -
Gso13g1182 195 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 7 194 - -
Gso13g1182 195 MobiDBLite consensus disorder prediction 118 143 - -
Gso13g1182 195 SMART rav1_2 18 81 IPR001471 GO:0003700|GO:0006355
Gso13g1182 195 CDD AP2 19 77 IPR001471 GO:0003700|GO:0006355
Gso13g1182 195 Gene3D AP2/ERF domain 18 77 IPR036955 GO:0003700|GO:0006355
Gso13g1182 195 Pfam AP2 domain 17 67 IPR001471 GO:0003700|GO:0006355
Gso13g1182 195 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1182 Gso-Chr13 26638044 26638935 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1182 3 194 AP2-EREBP Transcription Factor Family AT5G51990 43.434 1.87e-42 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gso13g1182 AP2 1.9e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1182 - - gmx:100778541 355.91