Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1181 ATGGCTTCCCTGAATTGCCTTCCAATTCCACTCTCAACACAAATTTTCACACACATAGGCACCATGTATTCCGGCAATGCAACCAGCAGCAGCAGAGGCTCTTCGGAATCCGGTAGGTACCGCGGAGTGAGGCGTAGGAACAGCGGAAAATGGGTGTCGGAGATTCGCGAGCCCAAGAAACCTAACAGAATTTGGTTAGGCACGTTCCCCACGCCAGAAATGGCGGCGGTGGCCTATGACGTGGCTGCGTTGGCTCTCAAGGGTAAGGATGCTGGGCTCAACTTCCCTGACTCAGCTTCTTCCCTTCCTGTCCCCGCTTCGCTTTCTGCACGCGACATTCAGGTGGCAGCTGCGGCCGCGGCGGCGGCTGCTGGAGCAGCAAAGGATTCTATGAGGACACAAACAGGGAATTATAACATTTCAGAGGGGCAAGAGAATCAAACTGGGATGGGTAACCAATTTGTGGATGAGGACTTGATCTTTGACATGCCTAATGTTCTTGTCAACATGGCTCAGGGAATGCTGCTTAGTCCTCCTCCTTTTGACATTGGTTTGGAACCGAATAGCCCAGAAAACACCGAACAAGAGACAAGCCTGTGGAATTTCCCTTAA 612 0.5196 MASLNCLPIPLSTQIFTHIGTMYSGNATSSSRGSSESGRYRGVRRRNSGKWVSEIREPKKPNRIWLGTFPTPEMAAVAYDVAALALKGKDAGLNFPDSASSLPVPASLSARDIQVAAAAAAAAAGAAKDSMRTQTGNYNISEGQENQTGMGNQFVDEDLIFDMPNVLVNMAQGMLLSPPPFDIGLEPNSPENTEQETSLWNFP* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1181 203 CDD AP2 40 98 IPR001471 GO:0003700|GO:0006355
Gso13g1181 203 Gene3D AP2/ERF domain 38 97 IPR036955 GO:0003700|GO:0006355
Gso13g1181 203 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Gso13g1181 203 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Gso13g1181 203 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Gso13g1181 203 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 25 203 - -
Gso13g1181 203 MobiDBLite consensus disorder prediction 181 203 - -
Gso13g1181 203 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF024 25 203 - -
Gso13g1181 203 MobiDBLite consensus disorder prediction 188 203 - -
Gso13g1181 203 Pfam AP2 domain 39 88 IPR001471 GO:0003700|GO:0006355
Gso13g1181 203 SUPERFAMILY DNA-binding domain 39 98 IPR016177 GO:0003677
Gso13g1181 203 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1181 Gso-Chr13 26622540 26624095 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1181 40 203 AP2-EREBP Transcription Factor Family AT2G36450 60.694 2.83e-50 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gso13g1181 AP2 6.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1181 - - gmx:100782443 364.385