Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1180 ATGGAAATGGAAGATCACCATCTTCATCAGCATCAGCATCAACATCACTTTAGCATGAACGATCTAAGGCAAGTGGTGAATAATGGGCCGAGGCCGGCCCATACCACCTTCTCCTCCATGCCGCCGCATCCAACGGCGGAGCTTTTCCCCGGCAACCACCACCACCATCACCACCACCACCACCACCGGAATCTCACTCCTTTACCCACTCATCATCCCCAACAACATCAGCACTTCGAGGTTATGATGTTTGGTTGCGACATAATGCCACCTGGCCTTCACGACTTTGCTAATTCCATACCCCATGATTCTGCTACTGCTGCTGTCACCACCATCACCCTACCCTCTCCACCTGTTACTAGCGGCTTTGATGTTGCTGAGGGTGCAGCTTGCATCGGTGGAGACCCCTCCACCGGAAGATGGCCAAGGCAAGAGACTCTCACTCTCCTTGAGATCAGATCTCGCTTGGACCCTAAATTCAAAGAGGCTAATCACAAAGGACCCTTGTGGGATGAAGTCTCTAGGATCATGTGTGAAGAACATGGATATAAAAGGAGTGGGAAAAAGTGCAGAGAGAAGTTTGAGAATTTATACAAATATTACAAGAAGACAAAAGAGGGTAAGGCAGGAAGGCATGATGGGAAGCATTACAGATTCTTTCGTCAACTTGAAGCCTTGTATGGAGAAAACAGTAACACAGTTTCACTCCCAGAAACTAATGTTGCTGTTGGCAGCATTCATTTTCAAGGGAGCCCCTCCCAAACAAATCAAGATAATAATAAGTTTCGGTCTCACAACAACAACAACACCAAGCATTGTGATAGCCTCAGCCTCACTAATTCCTCTAACTTTGGCACATCAACATCTGAAGATGATGATGGTGATGGTGGCAGTGATCACGGCATGGAGAATGAGTCCATGGAGAAGAGGAGAAAGAGGAAGAGTGGGAGGAGTTGGAAGGTGAAGATAAAAGACTTCATTGACTCACAGATGAGGAAGCTGGTGGAGAAGCAAAAGGAGTGGTTGGATAAGCTTGTGAAGACACTTGAAGAGAAAGAGAAGGAGAGAATGCTAAGAGAGGAAGAGTGGAGGAAACAAGAGGCAAACAGGTTAGAGAGGGAGCATAAGTTTTGGGCAAAAGAGAGAGCATGGATTGAAGCTAGAGATGCTGCTTTGATGGAGGCTTTGCATAAGCTAACTGGAACAGAAATCATGAAGCCTGAAACAGATCCTGAGGGTACTATAAATGCAATGCCGGCAGAAGAAGTTCAAAACCACAGAGAAAACAACCAGAATAATGAAGATGAGAGTGAAATCTTGAACAACAGTAATATTGTTATTAGTGGTGCTGATAGCTGGCAAGAATCCGAGATCACAAGGCTTCAACAGCTGAGAGCTGAGATGGAGATAAGGTTTCAATATAGTGAGATGTCAGAAGAGGTTTCATGGGATGTGGTAGCAACCAAAATGGCTTGTTTTGGCTACGAAAGGAGTGCTTTGATGTGCAAAGAGAAATGGGAAAGTATCAACAAGGAAGAGAATAACAACAAGAAGCGCAAGGAAAATTCTAGAAGCTGCTTTTACTTCAAGAACAATGAGGATCAACAACATTCTTCTCTATACGATCAAGGAAATGCCTATTGTGAAGATGATGTCAATGATCAAGGGAAAGAGATTCAGAGGCTTCAAACAAATAATGGTTCTTCTTTACCTTCAAAATCCAATGTTGGAAATGTTGCTCCTTCTGATAGTTGCTTTCCCTTCTTGATGAGTGCTGAGGGTGGAAACTTGTGGGAGAACTATGGCTTAAAGCTTAATAAAGAAAATCAAAACCACTGA 1839 0.4415 MEMEDHHLHQHQHQHHFSMNDLRQVVNNGPRPAHTTFSSMPPHPTAELFPGNHHHHHHHHHHRNLTPLPTHHPQQHQHFEVMMFGCDIMPPGLHDFANSIPHDSATAAVTTITLPSPPVTSGFDVAEGAACIGGDPSTGRWPRQETLTLLEIRSRLDPKFKEANHKGPLWDEVSRIMCEEHGYKRSGKKCREKFENLYKYYKKTKEGKAGRHDGKHYRFFRQLEALYGENSNTVSLPETNVAVGSIHFQGSPSQTNQDNNKFRSHNNNNTKHCDSLSLTNSSNFGTSTSEDDDGDGGSDHGMENESMEKRRKRKSGRSWKVKIKDFIDSQMRKLVEKQKEWLDKLVKTLEEKEKERMLREEEWRKQEANRLEREHKFWAKERAWIEARDAALMEALHKLTGTEIMKPETDPEGTINAMPAEEVQNHRENNQNNEDESEILNNSNIVISGADSWQESEITRLQQLRAEMEIRFQYSEMSEEVSWDVVATKMACFGYERSALMCKEKWESINKEENNNKKRKENSRSCFYFKNNEDQQHSSLYDQGNAYCEDDVNDQGKEIQRLQTNNGSSLPSKSNVGNVAPSDSCFPFLMSAEGGNLWENYGLKLNKENQNH* 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1180 612 Coils Coil 423 443 - -
Gso13g1180 612 Gene3D - 453 512 - -
Gso13g1180 612 Gene3D - 141 203 - -
Gso13g1180 612 ProSiteProfiles Myb-like domain profile. 133 198 IPR001005 -
Gso13g1180 612 MobiDBLite consensus disorder prediction 24 72 - -
Gso13g1180 612 PANTHER - 55 607 - -
Gso13g1180 612 CDD GT1 140 205 - -
Gso13g1180 612 Pfam Myb/SANT-like DNA-binding domain 140 226 IPR044822 -
Gso13g1180 612 Pfam Myb/SANT-like DNA-binding domain 451 531 IPR044822 -
Gso13g1180 612 CDD GT1 453 512 - -
Gso13g1180 612 MobiDBLite consensus disorder prediction 246 316 - -
Gso13g1180 612 MobiDBLite consensus disorder prediction 246 291 - -
Gso13g1180 612 MobiDBLite consensus disorder prediction 52 67 - -
Gso13g1180 612 MobiDBLite consensus disorder prediction 24 42 - -
Gso13g1180 612 MobiDBLite consensus disorder prediction 293 312 - -
Gso13g1180 612 Coils Coil 335 362 - -
Gso13g1180 612 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 55 607 - -
Gso13g1180 612 SMART sant 137 200 IPR001005 -
Gso13g1180 612 SMART sant 449 512 IPR001005 -
Gso13g1180 612 Coils Coil 503 523 - -
Gso13g1180 612 ProSiteProfiles Myb-like domain profile. 452 510 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1180 Gso-Chr13 26586607 26590481 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1180 140 608 Trihelix Transcription Factor Family AT5G03680 48.354 3.11e-132 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gso13g1180 Myb_DNA-bind_4 5.6e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1180 - - gsj:114381286 1137.09