Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1175 ATGAACCCAAATGATGCTAACTCTCCTAAGCCGTTGGAGATTCTGCAGATGAACCCTGTTCCTCCGTTTTTGTCCAAGACCTTCGACCTCGTCGACGACCCGACTCTCGACCCCATTATCTCATGGGGCTCCACCGGTTTTAGCTTCGTCGTGTGGGACCCTCTCGAGTTCGCGAGAATCGTCCTTCCTCGGCATTTCAAGCACAACAACTTCTCCAGTTTCGTTCGTCAGCTCAATACTTATGGATTCCGCAAGATTGACACGGACAAGTGGGAGTTTTTCAACGAAGCTTTCCAGCGAGGGAAGAAGCACTTGCTGAAGAACATCCAAAGGCGCAGGTCATCTCAATCCCAGCAGGTTGGTAGCTATATTGGAATCGAATGTTCTACTGAGGCAGGAAGGTCTGATGTTGAGATTGAGATAGAAAGGCTTAGGAAAGAAAGGACTATGTTGATGGAAGAGGTTGTTGATTTGAAACAAGAGCAGCGAAGAATGGCTCACCGCGCAGGAGAAGTGAATCAAAGGCTCCAATCCACAGAACAAAGGCAGAAACAAATGGTTTCTTTCCTGGTCAAGTTAATCCAGAACCCCGCCTTTTTAGCCCGCCTTAGGCATGAGGAGCAAAAAGAAATAGATTCTCCAAGAGTGGTAAGGAAGTTTGTCAAGCAGCACCAACATGAAACTGGAACAGCAGAAACTCTCCAAGAAGGGCAGATAGTGAGGTACCAACATGATTGGAGAAATATAGGCATGTCTTCCGAAACTCCAAAACTAAGTCCAGTTTCCATTGAACAGTCTCCTCACTACCTTTCACAGGGTTTGGCAGGAGAAGTGAGTGTAGGCGCAGAAGATCTTACTGCTCAAATAGAGAATATTGTATCAAATGACTTGGCTGCAGTGCACGGGATCACAGTGTCTCAGGAAATTATGATTGGAGAAGGATTATCTAGCTTTGGAGCTGAAGACCCCCTTTTCAAAGGGAAAAGTGTCATGAGTCCAATTCTAGAAGTTCCTCCAGAGTATTTTGCTTCCTTCCCAGAGGGTTTGACCAAGGGGAAAGACTTTCAAGATTTTTCTGCTCTTGGAACTGAAGGCATGATAAAGCTAGAAGATATATGGGACTCTGGCCTTAATGTTAGTGGTGCTGCTTCAGGTAGTGGGAATGAGCTGTGGAGCAATCATGTCAACTATGAAGAGTTTCCAGAATTTGGAGTCACAAGTGGTATGTCTGACTCAGACATCTGGGATATTGGCTTAGGAAGTTTGGGAATTGATAAGTGGCCAACTGATGAACCTTCTCTTGGTGAAACAAATGGTCAAGCTGGTCAACCAAAAGAAGATAGGCCTAAGAATTTTGGTCCATAG 1365 0.4542 MNPNDANSPKPLEILQMNPVPPFLSKTFDLVDDPTLDPIISWGSTGFSFVVWDPLEFARIVLPRHFKHNNFSSFVRQLNTYGFRKIDTDKWEFFNEAFQRGKKHLLKNIQRRRSSQSQQVGSYIGIECSTEAGRSDVEIEIERLRKERTMLMEEVVDLKQEQRRMAHRAGEVNQRLQSTEQRQKQMVSFLVKLIQNPAFLARLRHEEQKEIDSPRVVRKFVKQHQHETGTAETLQEGQIVRYQHDWRNIGMSSETPKLSPVSIEQSPHYLSQGLAGEVSVGAEDLTAQIENIVSNDLAAVHGITVSQEIMIGEGLSSFGAEDPLFKGKSVMSPILEVPPEYFASFPEGLTKGKDFQDFSALGTEGMIKLEDIWDSGLNVSGAASGSGNELWSNHVNYEEFPEFGVTSGMSDSDIWDIGLGSLGIDKWPTDEPSLGETNGQAGQPKEDRPKNFGP* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1175 454 SUPERFAMILY "Winged helix" DNA-binding domain 19 112 IPR036390 -
Gso13g1175 454 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 13 447 IPR027725 -
Gso13g1175 454 MobiDBLite consensus disorder prediction 426 454 - -
Gso13g1175 454 ProSitePatterns HSF-type DNA-binding domain signature. 62 86 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso13g1175 454 Pfam HSF-type DNA-binding 23 112 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso13g1175 454 Gene3D - 15 113 IPR036388 -
Gso13g1175 454 Coils Coil 134 161 - -
Gso13g1175 454 PRINTS Heat shock factor (HSF) domain signature 23 46 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso13g1175 454 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso13g1175 454 PRINTS Heat shock factor (HSF) domain signature 74 86 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso13g1175 454 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-3 13 447 - -
Gso13g1175 454 SMART hsfneu3 19 112 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1175 Gso-Chr13 26527640 26531202 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1175 9 429 HSF AT5G03720 43.349 8.64e-102 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gso13g1175 HSF_DNA-bind 3.1e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1175 K09419 - gmx:100780835 914.45