Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1170 ATGGAACCAACAACAACATTGAACAACATCATCAACAACAACAACACTGTTCCTGCAGGGTCACCACCACCACCACCACCACCCTCAGTGCCTCAGCCAATGAACATGAATGTCAACATGAACATGAACGTGGGAAACACAGAAGGAACAACACCAGCAGTTCCAACACCAACACCCGCGCCAACACCAGCACCAACAACAATGGTTCCTGCAGTGCCAGCTCCAACCACAACAACACCGGGGAGTTTGGATTTGTTTGGGAAGAAGAAGAGAGGGAGGCCCAGAAAGTATGATGCAGATGGGAACCTGAGAGTGAGTGCAACACCACCACCACCACCGGGTTTCACTTTGTCCACACCTTCTGAGTTCTCCTCTTCCAAAAGAGGGCGTGGTAAACACAACACAACTTTTGGCAACAACAACTACCAACAACTCTATTCTTCTTTTGGTGAGGTGTTTGCAAACACAGCTGGTGGTGATTTTGTACCGCATGTGGTGACTGTTTATACTGGAGAGGATGTTGCTGGAAAGATCGTGTCATTTGCCCAGAAGGGTCCAAGAGGAATATGCATTCTCTCTGCCAATGGAGCTATCTCGAATGTCACCATACGCCAACCTGGTTCTTCTGGTGGCATATTGACTTATGAGGGTCGGTTTGAGATTTTATCTTTGTCTGGATCATTCACAGTTGCTGACAACAGTGGCATGAAAAGCCGAACTGGTGGATTGAGTGTCTCACTTGCTGGTCCTGATGGTCGGGTGATAGGTGGTGGTGTTGCTGGACTTTTAACTGCTGCTGGCCCCATCCAGATTGTTGTAGGAAGCTTCATGCAAAATGGTTACAAGGCCCAAAAGAGGAAGTACCAACGTGAACAACAGATAGTGGTCACCCCTACTTCAGCTGGTCCAGAAATAGTGACAGCAGTAAGACCTATCTCACAAACAAATGCTGATGGTGAAAACTTTCTGATACCTATGTCTCAAATACCAGACCAAAACCAGAGAGAATCTGTCAGTGTTTCAAGTGACAAACAGAACCTAGATGCTACTCCTGATGCTGCTACTTGGAATGGTTCTGAGGAATATTCAGACCAGAGGACTTCCCCAGACATCAACATATCTTTGCCAGATGAATAG 1137 0.4688 MEPTTTLNNIINNNNTVPAGSPPPPPPPSVPQPMNMNVNMNMNVGNTEGTTPAVPTPTPAPTPAPTTMVPAVPAPTTTTPGSLDLFGKKKRGRPRKYDADGNLRVSATPPPPPGFTLSTPSEFSSSKRGRGKHNTTFGNNNYQQLYSSFGEVFANTAGGDFVPHVVTVYTGEDVAGKIVSFAQKGPRGICILSANGAISNVTIRQPGSSGGILTYEGRFEILSLSGSFTVADNSGMKSRTGGLSVSLAGPDGRVIGGGVAGLLTAAGPIQIVVGSFMQNGYKAQKRKYQREQQIVVTPTSAGPEIVTAVRPISQTNADGENFLIPMSQIPDQNQRESVSVSSDKQNLDATPDAATWNGSEEYSDQRTSPDINISLPDE* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1170 378 MobiDBLite consensus disorder prediction 18 33 - -
Gso13g1170 378 CDD DUF296 163 276 IPR005175 -
Gso13g1170 378 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 8 377 IPR039605 GO:0003680
Gso13g1170 378 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 8 377 - -
Gso13g1170 378 MobiDBLite consensus disorder prediction 330 378 - -
Gso13g1170 378 Pfam Plants and Prokaryotes Conserved (PCC) domain 163 277 IPR005175 -
Gso13g1170 378 ProSiteProfiles PPC domain profile profile. 158 301 IPR005175 -
Gso13g1170 378 MobiDBLite consensus disorder prediction 71 137 - -
Gso13g1170 378 MobiDBLite consensus disorder prediction 118 137 - -
Gso13g1170 378 SUPERFAMILY AF0104/ALDC/Ptd012-like 161 284 - -
Gso13g1170 378 MobiDBLite consensus disorder prediction 1 17 - -
Gso13g1170 378 MobiDBLite consensus disorder prediction 1 34 - -
Gso13g1170 378 MobiDBLite consensus disorder prediction 86 100 - -
Gso13g1170 378 Gene3D - 163 298 - -
Gso13g1170 378 MobiDBLite consensus disorder prediction 330 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1170 Gso-Chr13 26403056 26407906 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1170 88 346 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 47.426 2.74e-72 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1170 - - gmx:100779227 625.55