Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1166 ATGATGAAGCATTACCATGTCTTGTACATGTTTTTATTTTTCTTACCAATTTCTACGTTAAGTCTCCACCACAATGACACTCATGCACTCACCCTTTTTTGTCGCCAAAGTGACCTACATGGCTACCTTCTTTCAAATTGGACAGGCCACGATGCTTGCAACGCCGCCTGGCGCGGCGTTCTTTGCTCCCCGAACGGCCGCGTCACCGCCCTCTCCCTCCCTTCCCTCAACCTGCGTGGCCCACTAGACCCTCTCACTCCCCTCACCCACCTTCGCCTCCTCAACCTCCACGACAACCGCTTAAACGGCACCGTTTCAACCCTCTTCTCCAACTGCACCAACCTCCAACTCCTCTACCTCAGCAGCAACGACTTCTCCGGCGAGATCCCGCCGGAGATATCCTCCCTAAAATCCCTCCTCCGCCTCGACCTCTCTGACAACAACCTTCGCGGCAAGGTTGATGTCATATCCAACTTAACACAACTCATAACACTGAGACTCCAGAACAACCTTCTCTCCGGCGAGATCCCCGACCTTTCTTCCTCCATGAAAAATCTCAAAGAACTCAACATGACAAACAATGAGTTCTACGGTCGCTTACCATCCCCCATGTTGAAGAAATTCGGTTCTACAACCTTCTCCGGTAACGAAGGATTGTGTGGTGCATCACTGTTTCCGGGTTGTTCCTTCACCACAACCCCTCCTAACAATAATGATAGCAACAACAATAATGATAATAATAGTAATGAGAAGGAACCGTCTCAGACAGTTTCTTCAAATCCTAGCTCCTTCCCTGAGACCAGCATAATCGCCCGTCCAGGGAGGGAGCAGCAGCGCAAGGGCTTGAGTCCTGGTGCCATTGTGGCCATCGTGATCGCGAATTGCGTGGCACTGCTCGTGGTAGTGTCGTTCGCGGTGGCGCATTGTTGTGCTAGAGGGAGGGGTTCGAGTTTGGTGGGGAGTGGGGAGAGCTACGGGAAGAGGAAGAGTGAGAGCAGCTACAATGGGAGTGATGAGAAGAAGGTGTATGGTGGTGGTGAGAGTGATGGAACCAGTGGGACTGATAGGAGTAGGCTTGTATTTTTTGATCGGAGGAGTGAGTTTGAGTTGGAGGATTTGCTTCGAGCTTCGGCGGAGATGTTAGGGAAGGGTAGTTTAGGGACGGTTTATAGGGCGGTGCTTGATGATGGGTGCACGGTGGCGGTGAAGAGGCTCAAGGATGCGAACCCTTGCGCGAGGCATGAGTTTGAGCAGTACATGGATGTGATTGGGAAGCTTAAGCATCCTAATGTTGTGAGACTCAAAGCTTATTACTATGCCAAGGAGGAAAAGCTTCTTGTCTATGATTATCTCTCCAATGGAAGCTTGCATGCTCTTCTTCACGGGAACCGTGGCCCGGGAAGAATTCCATTGGATTGGACTACAAGAATAAGCTTGGTGTTAGGAGCAGCAAGAGGTCTTGCAAAGATTCATGCAGAGTACAGTGCAGCCAAAGTGCCTCACGGGAACGTGAAATCCTCCAACGTGCTTCTAGACAAGAACGGTGTTGCATGCATCTCCGATTTTGGGTTATCACTCCTATTAAACCCGGTTCACGCCATTGCCCGGTTGGGAGGGTACAGGGCCCCAGAGCAAGAACAGAACAAGAGGCTATCTCAGCAGGCTGATGTGTATAGTTTCGGAGTATTGCTGTTAGAAGTTCTCACAGGAAGAGCTCCTTCATCGCAGTACCCTTCACCGGCTCGTCCCCGAATGGAGGTAGAGCCGGAACAGGCTGCGGTGGACCTTCCTAAATGGGTTCGCTCGGTGGTGAGAGAAGAGTGGACTGCAGAGGTTTTTGATCAGGAGCTGTTGCGCTACAAGAACATTGAGGAAGAGCTTGTGTCCATGTTGCATGTGGGGTTGACTTGTGTGGTGGCGCAGCCAGAGAAGAGGCCAGCCATGGAGGAAGTTGTGAAGATGATTGAGGAGATCAGGGTGGAGCAATCGCCTCTTGGGGAGGACTATGATGTATCATGCAATTCGCTTTCGCCTTCCATTCCCACCACTGAAGATGGTCTAGCTTAG 2067 0.5114 MMKHYHVLYMFLFFLPISTLSLHHNDTHALTLFCRQSDLHGYLLSNWTGHDACNAAWRGVLCSPNGRVTALSLPSLNLRGPLDPLTPLTHLRLLNLHDNRLNGTVSTLFSNCTNLQLLYLSSNDFSGEIPPEISSLKSLLRLDLSDNNLRGKVDVISNLTQLITLRLQNNLLSGEIPDLSSSMKNLKELNMTNNEFYGRLPSPMLKKFGSTTFSGNEGLCGASLFPGCSFTTTPPNNNDSNNNNDNNSNEKEPSQTVSSNPSSFPETSIIARPGREQQRKGLSPGAIVAIVIANCVALLVVVSFAVAHCCARGRGSSLVGSGESYGKRKSESSYNGSDEKKVYGGGESDGTSGTDRSRLVFFDRRSEFELEDLLRASAEMLGKGSLGTVYRAVLDDGCTVAVKRLKDANPCARHEFEQYMDVIGKLKHPNVVRLKAYYYAKEEKLLVYDYLSNGSLHALLHGNRGPGRIPLDWTTRISLVLGAARGLAKIHAEYSAAKVPHGNVKSSNVLLDKNGVACISDFGLSLLLNPVHAIARLGGYRAPEQEQNKRLSQQADVYSFGVLLLEVLTGRAPSSQYPSPARPRMEVEPEQAAVDLPKWVRSVVREEWTAEVFDQELLRYKNIEEELVSMLHVGLTCVVAQPEKRPAMEEVVKMIEEIRVEQSPLGEDYDVSCNSLSPSIPTTEDGLA* 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1166 688 ProSiteProfiles Protein kinase domain profile. 375 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g1166 688 SUPERFAMILY L domain-like 24 214 - -
Gso13g1166 688 Pfam Protein kinase domain 379 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g1166 688 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 7 673 - -
Gso13g1166 688 SUPERFAMILY Protein kinase-like (PK-like) 379 656 IPR011009 -
Gso13g1166 688 MobiDBLite consensus disorder prediction 231 278 - -
Gso13g1166 688 Pfam Leucine rich repeat 90 149 IPR001611 GO:0005515
Gso13g1166 688 Gene3D Transferase(Phosphotransferase) domain 1 451 672 - -
Gso13g1166 688 MobiDBLite consensus disorder prediction 669 688 - -
Gso13g1166 688 MobiDBLite consensus disorder prediction 231 267 - -
Gso13g1166 688 MobiDBLite consensus disorder prediction 316 353 - -
Gso13g1166 688 Gene3D Ribonuclease Inhibitor 23 217 IPR032675 -
Gso13g1166 688 PANTHER LRR RECEPTOR-LIKE KINASE 7 673 - -
Gso13g1166 688 Gene3D Phosphorylase Kinase; domain 1 350 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1166 Gso-Chr13 26342315 26345477 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1166 19 684 Receptor kinase-like Gene Family AT2G36570 65.044 0.0 848
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Gso13g1166 Pkinase 1.2e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1166 - - gmx:102660494 1279.62