Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1165 ATGGCCTCTTGCGACGACGACGACGACTTCTCTCTCCTCCGCGACGACAGCCACCACCACCTCCACCAACCCTACGCGCCGCACCACCACCACTTCTCTCCCTCCGCCGTCGCCGCCTCCGTGCCGCCCAAGCCCGTTGCCGAAGCTGAGGACTTCGCCAACCCCTTCGAAGACGACGACGGTAGCGCCAGCGAGAAGCGCAAGGAGTGCGACGAGATCGGTGAGGGAGCCGCTTCGTACGGATTCAACAACAAGAGATCTAAGGCGACTCCGTCGAACGGCGCCGTGTCCGGCGGCGCCGAGTACCGCAAGGACCGGGAGGAGTGGAGCGACACGGCGATTGTGTGCCTCCTCGAGGCGTACACGGAGAAGTTCACGCAGCTGAACCGGGGGAACCTGAGGGGAAGGGATTGGGAGGAGGTTGCGGCGGTGGTGAGCGAACGGTGCGAGAACCAATCGAAGAGCGTGGAACAGTGTAAGAACAAGGTCGATAACCTGAAGAAGAGGTACAAATTGGAGCGGCACAGAATGAGCAGTGGCTGCATTTCCACCAGCCACTGGCCTTGGTTCAAGCAATTGGAGCAGATCGTCGGAAATTCTCTTCCGGCGAAGTTCTCCGACGAGGATAAAGCGGTGGTTTCCGCCGGAACTACTCCCAGGCAATCGAAGAGATATGGAGTGGCAACACCCAGCACTGGAGGTCAAGCAAATAGCATGAAGTCCAAAGCATTCTCAAACAGATGGCGGAGGGTAGTTTTCAAAATTAGTGGGGCAGCTCTTACTGGATCTGATACCTGCAATATTGACCCTAAGGTGGCCATGCTAGTTTCAAGAGAAGTTTCCATAGCTTCCCACCTTGGTGTGGAGGTGGCAATTGTTGTTGGAGGTCGTAATTTCTTCTCTGGAGATGCATGGGTAAATGCGACAGGTTTAGAAAGATGTACTGCATACCAAGTTGGCATGATGGCCACTGTGATGAATTCAATATTGCTCCAATCTACTCTAGAGAAGATGGGTGTTCAGACTCGTGTACAAACTTCAGTTGCCATGCAGGAGTTTGCTGAACCATACAATAGGCAGCGGGCCATCAGACATCTTGAGAAAGGAAGGGTTGTTATATTTGGTGGCATTGGTTTTGGTGCTGGCACTCCTCTTTTCTCAACTGACATAGCTGCAGCTCTTCGGGCTTCAGAGCTTAATGCGGAAGCAGTCCTCAAGGGTACTAACGTAGATGGTGTATATGACTGCAACTCACGAGACAACAATTTCACTTTTGAGCACATATCCTTCAGAGAGTTGGGTTCAAGAGGTGTCACCTCTATGGATATGTCAGCGCTGACATTCTGTGAGGAAAATGCCATTCCTGTTGTGGTTTTTAATCTACTGGAGCCTGGGAACATCTCAAAAGCTTTGTGTGGAGAACAGGTTGGCACACTAATTGACCAAACTGGAGCAATAAGCTAA 1464 0.5239 MASCDDDDDFSLLRDDSHHHLHQPYAPHHHHFSPSAVAASVPPKPVAEAEDFANPFEDDDGSASEKRKECDEIGEGAASYGFNNKRSKATPSNGAVSGGAEYRKDREEWSDTAIVCLLEAYTEKFTQLNRGNLRGRDWEEVAAVVSERCENQSKSVEQCKNKVDNLKKRYKLERHRMSSGCISTSHWPWFKQLEQIVGNSLPAKFSDEDKAVVSAGTTPRQSKRYGVATPSTGGQANSMKSKAFSNRWRRVVFKISGAALTGSDTCNIDPKVAMLVSREVSIASHLGVEVAIVVGGRNFFSGDAWVNATGLERCTAYQVGMMATVMNSILLQSTLEKMGVQTRVQTSVAMQEFAEPYNRQRAIRHLEKGRVVIFGGIGFGAGTPLFSTDIAAALRASELNAEAVLKGTNVDGVYDCNSRDNNFTFEHISFRELGSRGVTSMDMSALTFCEENAIPVVVFNLLEPGNISKALCGEQVGTLIDQTGAIS* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1165 487 Coils Coil 149 176 - -
Gso13g1165 487 SUPERFAMILY Carbamate kinase-like 247 480 IPR036393 -
Gso13g1165 487 CDD AAK_UMPK-PyrH-Ec 249 481 IPR015963 GO:0005737|GO:0006221|GO:0033862
Gso13g1165 487 Gene3D - 109 172 - -
Gso13g1165 487 Gene3D - 243 481 IPR036393 -
Gso13g1165 487 Pfam Myb/SANT-like DNA-binding domain 106 196 IPR044822 -
Gso13g1165 487 MobiDBLite consensus disorder prediction 80 99 - -
Gso13g1165 487 MobiDBLite consensus disorder prediction 216 240 - -
Gso13g1165 487 PANTHER ASPARTATE/GLUTAMATE/URIDYLATE KINASE FAMILY PROTEIN 59 487 IPR011817 GO:0006221|GO:0009041
Gso13g1165 487 Pfam Amino acid kinase family 250 460 IPR001048 -
Gso13g1165 487 Hamap Uridylate kinase [pyrH]. 246 481 IPR015963 GO:0005737|GO:0006221|GO:0033862
Gso13g1165 487 MobiDBLite consensus disorder prediction 20 70 - -
Gso13g1165 487 PANTHER URIDYLATE KINASE 59 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1165 Gso-Chr13 26336818 26341873 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1165 78 200 Trihelix Transcription Factor Family AT3G14180 37.302 5.95e-17 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gso13g1165 AA_kinase 2.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1165 - - gmx:100805459 908.286