Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1160 ATGGAGTGGAATGGGAGCACAAGACGTTATGTTCCCCGAGCAGATTCTTCTTTGAGCTTCCTTTACAACTACAACTACACCCCATATCCAGGAATGGAAGTGAAGCAACAAGCACTGGCAGAGACAAGTTCACCCATGGAAAAAATGAACTGCGGGAACCAGGAGAAGAAGAAGCGATTAACAAGTGACCAGTTAGATTCGTTGGAGAATAGTTTTCAGAAGGAGATCAAGTTAGATCCTGATAGAAAGATGAAGCTTTCCAAGGAGTTAGGGCTTCAACCTCGTCAAATTGCTGTTTGGTTCCAAAACAGGCGTGCAAGGTGGAAGAACAAGCAACTTGAACACTTGTACGATTCACTTAAACAGGAATTTGATGTCATATCTAAGGAAAAGCAGAAGCTCGAGGAAGAGGTAATGAAGTTGAAGACTATGCTGAGAGAGCAAGCTTCTAGAACCCAACAAGTGTCAACAGGATACACAGAAATCTCTGGGGAAGAAACAGTGGAAAGCACGTCAGAGGCACTGCGTTGCTCCAAACGGGGAACACTGCACCATCAGCAGCAGCAGAATAATATTGGAGAGGGAAACTGTTCCTTCACTTTGGAAGATTACAACACAGTGCCAGTACTACCCTATTGGCCTGGGGTCCCTTATTATCATCCCTAA 666 0.4459 MEWNGSTRRYVPRADSSLSFLYNYNYTPYPGMEVKQQALAETSSPMEKMNCGNQEKKKRLTSDQLDSLENSFQKEIKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWKNKQLEHLYDSLKQEFDVISKEKQKLEEEVMKLKTMLREQASRTQQVSTGYTEISGEETVESTSEALRCSKRGTLHHQQQQNNIGEGNCSFTLEDYNTVPVLPYWPGVPYYHP* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1160 221 ProSiteProfiles 'Homeobox' domain profile. 51 111 IPR001356 GO:0003677
Gso13g1160 221 Coils Coil 103 151 - -
Gso13g1160 221 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 1 211 - -
Gso13g1160 221 PRINTS Lambda-repressor HTH signature 82 91 IPR000047 GO:0003677
Gso13g1160 221 PRINTS Lambda-repressor HTH signature 91 107 IPR000047 GO:0003677
Gso13g1160 221 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 211 IPR045224 GO:0003700
Gso13g1160 221 SUPERFAMILY Homeodomain-like 44 113 IPR009057 -
Gso13g1160 221 ProSitePatterns 'Homeobox' domain signature. 86 109 IPR017970 GO:0000981|GO:0006355
Gso13g1160 221 SMART HOX_1 54 115 IPR001356 GO:0003677
Gso13g1160 221 MobiDBLite consensus disorder prediction 40 64 - -
Gso13g1160 221 CDD homeodomain 56 112 IPR001356 GO:0003677
Gso13g1160 221 Pfam Homeodomain 56 110 IPR001356 GO:0003677
Gso13g1160 221 Pfam Homeobox associated leucine zipper 111 145 IPR003106 GO:0006355|GO:0043565
Gso13g1160 221 Gene3D - 48 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1160 Gso-Chr13 26291651 26294075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1160 52 150 Homeobox Transcription Factor Family AT2G36610 67.290 2.33e-45 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso13g1160 Homeodomain 4.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1160 - - gmx:100778007 455.677