Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1159 ATGGGGGACAAGCACCAGCAGCACCAGGAAGACAGCAGCGATTTCACCTCCGAGGACGAAGGCACCGAAGATTACCGCCGCGGCGGCTACCACGCCGTCCGAATCGGCGACACCTTCAACGCCGGTCGCTACGTCGTTCAGAGTAAACTCGGTTGGGGCCATTTCTCCACTGTCTGGCTCGCTTGGGACACCAAACATTCTAGATACGTGGCTTTGAAAGTTCAGAAGAGTGCTCAGCACTACACCGAGGCGGCCATGGATGAGATAAAAATTTTGCAGCAGATTGCGGAGGGAGATCCTGATGATAAGAAATGTGTGGTGAAGCTTTTGGACCATTTCAAGCATTCTGGTCCCAATGGGCAGCATGTTTGCATGGTGTTTGAGTACCTTGGGGACAATCTTTTGACTCTTATTAAGTACTCAGATTATCGAGGGTTGCCTATTGCCATGGTTAAGGAGATTTGCTTTCATATTCTGGTTGGATTGGATTACTTGCACAAGCAGCTTTCTATCATACATACTGACTTGAAGCCCGAAAACATCCTGCTCTTGTCGACAATTGATCCGTCTAAGGATCCTAGGAAGTCTGGTGCACAGCTTATTCTTCCGGATAGTAAAGATAAGATGGCACTGGAGTCAGCAGGGGTGAAAGATATGAAGACGTTGAATGGGGATTTGATTAAGAATCATAAAAAAAAGATTAAGAGAAAAGCTAAGCAAGCAGCCCATGGATGTGTTGAAAAGGAAGCTTCTGAAGGAGTTGAGGGTAATGCTGAAACCTCTGGGGCTGTGGAGTTGTCTCCCAATGCGAGTTCTGCAAGAGAACAGGCTTCTAGTTCTGCAGGAACTAGTCGGTTATCCGATGCTGATGCAACAAAGTTGAAAGAGCAGGGTAACAAAAGAGGAAGCCGCTCTATGAGACAGAAGCTGCTGGCATTGGTTGATCTCAAGTGCAAGTTAGTGGACTTTGGTAATGCCTGCTGGACATATAAACAGTTTACTAATGATATTCAGACAAGACAGTATCGGTGCCCGGAGGTGATCCTTGGGTCAAAATATTCTACGTCTGCAGATCTTTGGTCTTTTGCTTGCATTTGTTTTGAGCTTGCAACTGGAGATGTGTTATTTGATCCTCACAGTGGTGAGAACTTTGATAGGGATGAGGACCACTTAGCATTAATGATGGAACTTCTTGGAATGATGCCACGTAAGATAGCACTTGGTGGCCGTTATTCCCGTGATTTCTTTAATAGATATGGTGACTTAAGGCACATCCGGCGGTTGCGATTCTGGCCCTTGAATAAAGTCCTCGTGGAGAAGTATGACTTCAGTGAGAAAGATGCAAATGATATGACAGACTTTTTGGTTCCCATCCTTGACTTTGTTCCTGAGAAGCGGCCAACAGCTGGTCAGTGCCTTCTCCATCCATGGATGAATGCTGGTCCACGCCTTTTGCAGCCATCTATGCCTTCTAATCACAACCCTGCTGCTGAAACTTCTGCTTCGGATCAGAAGAAAAGGGACAAAGATGAGAGGGAGGCCATGGAGGCAGGAATGGGAAATATTGTTATCAATTCAGATTCAAAACCACTAATGCATTCTCCATCAAAGAAAGTCTTCCAAGGCAGCAGCCTGAAGTAG 1641 0.4619 MGDKHQQHQEDSSDFTSEDEGTEDYRRGGYHAVRIGDTFNAGRYVVQSKLGWGHFSTVWLAWDTKHSRYVALKVQKSAQHYTEAAMDEIKILQQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGDNLLTLIKYSDYRGLPIAMVKEICFHILVGLDYLHKQLSIIHTDLKPENILLLSTIDPSKDPRKSGAQLILPDSKDKMALESAGVKDMKTLNGDLIKNHKKKIKRKAKQAAHGCVEKEASEGVEGNAETSGAVELSPNASSAREQASSSAGTSRLSDADATKLKEQGNKRGSRSMRQKLLALVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVILGSKYSTSADLWSFACICFELATGDVLFDPHSGENFDRDEDHLALMMELLGMMPRKIALGGRYSRDFFNRYGDLRHIRRLRFWPLNKVLVEKYDFSEKDANDMTDFLVPILDFVPEKRPTAGQCLLHPWMNAGPRLLQPSMPSNHNPAAETSASDQKKRDKDEREAMEAGMGNIVINSDSKPLMHSPSKKVFQGSSLK* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1159 546 CDD STKc_SRPK 33 478 - -
Gso13g1159 546 MobiDBLite consensus disorder prediction 500 516 - -
Gso13g1159 546 MobiDBLite consensus disorder prediction 240 254 - -
Gso13g1159 546 SUPERFAMILY Protein kinase-like (PK-like) 39 492 IPR011009 -
Gso13g1159 546 SMART serkin_6 44 478 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g1159 546 MobiDBLite consensus disorder prediction 262 287 - -
Gso13g1159 546 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 11 539 - -
Gso13g1159 546 MobiDBLite consensus disorder prediction 289 303 - -
Gso13g1159 546 ProSitePatterns Protein kinases ATP-binding region signature. 50 73 IPR017441 GO:0005524
Gso13g1159 546 MobiDBLite consensus disorder prediction 527 546 - -
Gso13g1159 546 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Gso13g1159 546 PANTHER SERINE KINASE-LIKE PROTEIN 11 539 - -
Gso13g1159 546 Gene3D Phosphorylase Kinase; domain 1 20 126 - -
Gso13g1159 546 MobiDBLite consensus disorder prediction 238 303 - -
Gso13g1159 546 MobiDBLite consensus disorder prediction 485 499 - -
Gso13g1159 546 ProSiteProfiles Protein kinase domain profile. 44 478 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g1159 546 MobiDBLite consensus disorder prediction 483 546 - -
Gso13g1159 546 Gene3D Transferase(Phosphotransferase) domain 1 127 479 - -
Gso13g1159 546 MobiDBLite consensus disorder prediction 1 24 - -
Gso13g1159 546 Pfam Protein kinase domain 315 478 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g1159 546 Pfam Protein kinase domain 44 184 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1159 Gso-Chr13 26271254 26279935 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1159 11 529 EF-hand Containing Proteins AT5G22840 70.937 0.0 752
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Gso13g1159 Pkinase 1.5e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1159 K08832 - gmx:100810777 1092.41