Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1150 ATGGCGGTTCCCGCGACGGTCGCCGCCGTTCCGGCATCGATTTACGTCGGAGACCTCCACCCAGACGTCCAGGAACACCACCTCTTCGCGGCTTTCGTGGAGTTCGGGAGCATCGCTTCCGTTCGCGTCTGCAGAGACCGCGTGACGATGAACTCGCTCTGTTACGGTTACGTCAACTTCAGGTCTCAGCAAGACGCAATTCGTGCAATCAAGTTGAGAAACAATTCTTATCTAAATGGAAAAGTGATAAGGGTCATGTGGTTACATCGTGATCCTAATGCAAGGAAAAGTGGCAGAGGGAATGTGTTTGTTAAGAACTTAGCTGGATCCATAGATAATGCGGGGCTACATGATTTATTTAAAAAATATGGGAATATTTTGTCCAGCAAAGTTGTAATGTCTGAGGATGGGAAGAGCAAAGGGTATGGCTTTGTTCAATTTGAGTGGGAGGAATCTGCAAATAATGCCATTGAGAAGCTGAATGGCTCTACAGTGGGAAACAAGCAGATTTATGTTGGGAAGTTTGTCAGAAAAGGTGACCGCATTTTGCCTGGCTATGATGCTAAATATACAAATTTGTACATTAAAAACTTGGACTCAGATATTACAGAAGCACTTCTTCAGGAAAAGTTCTCCTCTTTTGGAAAAATTATTAGCTTGGCTATATCGAAGGATGACAATGGGCTATCAAAGGGTTTTGCATTTGTGAACTATGAGAATCCAGATGATGCTAAAAAGGCAATGGAAGCAATGAATGGATTACAATTTGGTTCAAAGTATCTGTATGTAGCTAGGGCACAAAAGAAGGCTGAACGTGAGCAAATCTTGCATCGCCAATTTGAGGAGAAACGTAAGGAACAAATATTGAAATATCAGGCATCTAACTTGTATGTGAAGAACATTGATGATGATGTTACCGATAAAGAACTGCGAGATCTGTTTAGCTCATGTGGCACTATAACTTCTGTAAAAGTTATGCGAGATGACAAAGGGATAAGCAAGGGGTTTGGTTTTATCTGCTTCTCCAACCCAGAGGAGGCTAATAAAGCTGTGATGTCTTTTAATGGATGCATGTTCCACCGTAAACCACTGTATATTGCTATTGCTCAGAGGAAAAAGGAAAGGAAAACACAGTTGAATCTCCACTATGCACCGCAACAAGCAGGATTGGATGGATCTTCAACTCCAGTTATCCCTGGTGGAGTTCCACCTTACTTCTATCATAGTGTTGCTTCACTAATGTTTCAATCTGGGCTGTTGTATCAACCTCTGGGATTGAGGTCAGGATGGAGGGCTAATGACTTTGTGCCTCCCTCTAGATCATTTCAACATTCACAGGTTCCCATTGTTCCTAACTTTACTAGGCATCAAAGGCAGAACAGGGGCAGCAGGATGAATGGGAATTTGAATTCACTGGGAAAAGCTTACTCTAGTGTATATATCCCGCAACTGCAATACTATCAGGCAGTTGAGTACTCGGCAGCCTAG 1488 0.4294 MAVPATVAAVPASIYVGDLHPDVQEHHLFAAFVEFGSIASVRVCRDRVTMNSLCYGYVNFRSQQDAIRAIKLRNNSYLNGKVIRVMWLHRDPNARKSGRGNVFVKNLAGSIDNAGLHDLFKKYGNILSSKVVMSEDGKSKGYGFVQFEWEESANNAIEKLNGSTVGNKQIYVGKFVRKGDRILPGYDAKYTNLYIKNLDSDITEALLQEKFSSFGKIISLAISKDDNGLSKGFAFVNYENPDDAKKAMEAMNGLQFGSKYLYVARAQKKAEREQILHRQFEEKRKEQILKYQASNLYVKNIDDDVTDKELRDLFSSCGTITSVKVMRDDKGISKGFGFICFSNPEEANKAVMSFNGCMFHRKPLYIAIAQRKKERKTQLNLHYAPQQAGLDGSSTPVIPGGVPPYFYHSVASLMFQSGLLYQPLGLRSGWRANDFVPPSRSFQHSQVPIVPNFTRHQRQNRGSRMNGNLNSLGKAYSSVYIPQLQYYQAVEYSAA* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1150 495 SUPERFAMILY RNA-binding domain, RBD 292 383 IPR035979 GO:0003676
Gso13g1150 495 CDD RRM4_I_PABPs 294 371 - -
Gso13g1150 495 SMART rrm2_1 101 173 IPR003954 GO:0003676
Gso13g1150 495 SMART rrm2_1 295 367 IPR003954 GO:0003676
Gso13g1150 495 SMART rrm2_1 13 86 IPR003954 GO:0003676
Gso13g1150 495 SMART rrm2_1 192 264 IPR003954 GO:0003676
Gso13g1150 495 Coils Coil 263 283 - -
Gso13g1150 495 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 268 IPR000504 GO:0003723
Gso13g1150 495 SMART rrm1_1 192 264 IPR000504 GO:0003723
Gso13g1150 495 SMART rrm1_1 295 367 IPR000504 GO:0003723
Gso13g1150 495 SMART rrm1_1 13 86 IPR000504 GO:0003723
Gso13g1150 495 SMART rrm1_1 101 173 IPR000504 GO:0003723
Gso13g1150 495 Gene3D - 180 275 IPR012677 -
Gso13g1150 495 SUPERFAMILY RNA-binding domain, RBD 13 179 IPR035979 GO:0003676
Gso13g1150 495 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 12 390 IPR006515 GO:0003723
Gso13g1150 495 Gene3D - 102 179 IPR012677 -
Gso13g1150 495 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 177 IPR000504 GO:0003723
Gso13g1150 495 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 371 IPR000504 GO:0003723
Gso13g1150 495 PANTHER POLYADENYLATE-BINDING PROTEIN 5 487 - -
Gso13g1150 495 Gene3D - 276 381 IPR012677 -
Gso13g1150 495 CDD RRM2_I_PABPs 98 174 IPR045305 -
Gso13g1150 495 PANTHER RNA BINDING PROTEIN 5 487 - -
Gso13g1150 495 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 364 IPR000504 GO:0003723
Gso13g1150 495 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 261 IPR000504 GO:0003723
Gso13g1150 495 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 84 IPR000504 GO:0003723
Gso13g1150 495 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Gso13g1150 495 CDD RRM1_I_PABPs 13 92 - -
Gso13g1150 495 SUPERFAMILY RNA-binding domain, RBD 184 278 IPR035979 GO:0003676
Gso13g1150 495 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Gso13g1150 495 Gene3D - 5 101 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1150 Gso-Chr13 26174880 26183702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1150 10 491 Eukaryotic Initiation Factors Gene Family AT2G36660 53.402 6.95e-176 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1150 K13126 - gmx:100807057 988.023