Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1140 ATGGAATCCTCCGCCACCACCGTTTCCCCCGATTCCGAAAACGACACCACCAACACGCGAGTGAACGGCTACGTCGTTTACACTCGCCGCAAGCGGACCCTCACCCTCCATTCCAGTAATGACGCCGCCAAGTGGCTCAGAACAGCTGATATCAAAGTCGAAGCTCGCCACGGCGGCGGCGGCGACGACGACGACGTCGTTTTCAAGCGCCGCCCCAAGCTCGAGTCTGAATTAACGGAGGTGGAATTGAAAACGGCGACGTCGTTGAAGACGACGAAGAAGATCATTGTCGTCCACAAGAAGCCCGTCACCGTCAAGGAGCTATTCCAAACGGGCTTGCTCGATGGGGTTCCGGTCGTTTACGTCGGTTGCAAAAAGGATTCAACTACGGAATTGCGAGGTGAAATTAAAGATGGGGGGATCTTGTGCTCATGCCGTCTGTGCAATGGACGCAGGGTTATTCCACCTTCCCAATTCGAAATTCATGCGTGCAACATATATAAGAGGGCAGCACAATATATTTGCCTTGAAAATGGGAAGAGCCTGCTTGACCTAATGAGAGCATGCAGGGCAGCTCCGCTACATACATTGGAGGCGACCATTCAAAATTTTATTAATTCTCCGCCCGAGGAGAAATATTTTACTTGCAAAAGTTGCAGAGGGTGTTTCCCTTCTTCCAATGTGGAAAGAGTGGGGCTTTTATGTCTATCTTGCGTGGAATCAAGGAAATCTGAAAAAAGTTCTATTCATGCCGTGGGTAAAAGAATAAGGTCCCCTCGGCCAGTATTATTCTCCCATTCATGTTCATGTTGTACTACTGAATCTGAACTCTGTATCTCTCCTCAAACTAAGAAACAGTGGAAGACAAGAACAAAGTCATCCAAACTGTCGGTAAAATTGAAGACTGTACCAATTACTTCAAAGTGTTTATCTCCACAAAACAAAAGTCAGTGGAGGATCTCTAAAAGGTATCAACGATTACATAAATTAATTTTTGAAGAGGATGGATTGCCTAATGGAGCTGAAGTAGCTTATTATGCACGTGGACAGAAATTGCTTGAGGGTATCAAAACACGCTGTGGAATTGTCTGTCGATGCTGCAACACTGAGGTCAGCCCCTCACAGTTTGAGGTCCATGCAGGCTGGGCTTCTCGCAGGAAACCTTATGCATACATCTACACGTCAAATGGGGTGTCACTCCATGAGTTAGCAATATTTCTCTCAAAAGATCACAAATGCACTACAAAGCAGAATGACTATGTATGTGTTGTTTGTTGGGATGGTGGAAACCTGTTGCTTTGTGATGGATGTCCAAGGGCATTTCATAAAGAATGTGCATCTGTATCAAGTATTCCTCGGGGTGAGTGGTACTGTCAAATTTGTCAACACACATTCCTCAGAGAAAGGCCTGTGTTATACAATGCCGATGCTGTGGCAGCTGGAAGGGTAGAAGGTGTTGATCCTATTGAGCAGATCGCCAAGAGATGCATTCGCATAGTAAAAGACATAGGAGCTGAGATGGGTGGATGTGTTTTATGCAGGAGTTCTGACTTCAGCAGATCAGGATTTGGTCCTCGTACAATTATAATTTGTGATCAGTGCGAAAAGGAATATCATGTTGGCTGCTTGAGGGATCATAAGAAGGCATATTTGAAGGAGTTGCCGGAAGGGGATTGGTTTTGTTGCAATGATTGCACAATAATACATTCTACTTTGGAGAATCTCTTGATTAGGGTGGCTGAGAGACTCCCTGAAGCTCTTTTGGATGTTATAAAGAAGAAGCAAGTGGAAAGATGTTTAGAACCCCTTAATGAGATTGATGTACGATGGAAACTTCTTAATGGAAAAATTGCATCTCCTGAAACTAGGCCATTGCTTTTGGAGGCAGTGTCCATGTTTCATGAATGCTTTGATCCTATAGTTGATCCAGCTGCTGGACGTGACCTTATTCCTGCCATGGTTTATGGAAGGAATTTGCAGACTCAGGATTTTGGAGGAATGTATTGTGCATTATTGATTGTCAATTCATCTGTGGTATCCGCGGGCATGGTTCGAATTTTTGGTAGAGATATTGCTGAACTCCCTTTAGTTGCAACAAGATATAAGAACCGTGGAAAGGGCTACTTCCAAACACTTTTCGCATGCATTGAGAGGCTGCTGGCTTTTTTGAATGTGAAAAATCTTGTGCTACCAGCTGCTGAAGAAGCAGAATCAATATGGACAGAAAAATTCGGGTTTAGCAAGATGAAACTTGACCAGCTCACCAACTATAGAATGAACTGCCATCAAATCATGGCATTCAAAGGGACAAACATGCTTCATAAAACGGTGCCTCGATGTCGGGTCACCAATTCTCAAGCATGA 2364 0.4454 MESSATTVSPDSENDTTNTRVNGYVVYTRRKRTLTLHSSNDAAKWLRTADIKVEARHGGGGDDDDVVFKRRPKLESELTEVELKTATSLKTTKKIIVVHKKPVTVKELFQTGLLDGVPVVYVGCKKDSTTELRGEIKDGGILCSCRLCNGRRVIPPSQFEIHACNIYKRAAQYICLENGKSLLDLMRACRAAPLHTLEATIQNFINSPPEEKYFTCKSCRGCFPSSNVERVGLLCLSCVESRKSEKSSIHAVGKRIRSPRPVLFSHSCSCCTTESELCISPQTKKQWKTRTKSSKLSVKLKTVPITSKCLSPQNKSQWRISKRYQRLHKLIFEEDGLPNGAEVAYYARGQKLLEGIKTRCGIVCRCCNTEVSPSQFEVHAGWASRRKPYAYIYTSNGVSLHELAIFLSKDHKCTTKQNDYVCVVCWDGGNLLLCDGCPRAFHKECASVSSIPRGEWYCQICQHTFLRERPVLYNADAVAAGRVEGVDPIEQIAKRCIRIVKDIGAEMGGCVLCRSSDFSRSGFGPRTIIICDQCEKEYHVGCLRDHKKAYLKELPEGDWFCCNDCTIIHSTLENLLIRVAERLPEALLDVIKKKQVERCLEPLNEIDVRWKLLNGKIASPETRPLLLEAVSMFHECFDPIVDPAAGRDLIPAMVYGRNLQTQDFGGMYCALLIVNSSVVSAGMVRIFGRDIAELPLVATRYKNRGKGYFQTLFACIERLLAFLNVKNLVLPAAEEAESIWTEKFGFSKMKLDQLTNYRMNCHQIMAFKGTNMLHKTVPRCRVTNSQA* 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1140 787 MobiDBLite consensus disorder prediction 1 20 - -
Gso13g1140 787 PANTHER AUTOIMMUNE REGULATOR 56 783 - -
Gso13g1140 787 SUPERFAMILY FYVE/PHD zinc finger 417 465 IPR011011 -
Gso13g1140 787 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 407 484 IPR013083 -
Gso13g1140 787 ProSiteProfiles Zinc finger PHD-type profile. 419 464 IPR019787 -
Gso13g1140 787 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 507 567 IPR013083 -
Gso13g1140 787 SMART PHD_3 421 462 IPR001965 -
Gso13g1140 787 SMART PHD_3 509 566 IPR001965 -
Gso13g1140 787 SUPERFAMILY FYVE/PHD zinc finger 503 566 IPR011011 -
Gso13g1140 787 ProSitePatterns Zinc finger PHD-type signature. 422 461 IPR019786 -
Gso13g1140 787 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 665 750 IPR016181 -
Gso13g1140 787 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 56 783 - -
Gso13g1140 787 Pfam Tify domain binding domain 134 189 IPR032308 -
Gso13g1140 787 Pfam Tify domain binding domain 356 405 IPR032308 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1140 Gso-Chr13 26026423 26037628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1140 88 777 PHD Transcription Factor Family AT2G36720 50.894 0.0 745
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1140 - - gmx:100816654 1561.58