Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1133 ATGGCGGTTCCTGGGAGGCGCAACGGCATCAACGACGACGAAGAGGAGTTAGACGACAATGCCCTTTTCGAAGAACAAGGTGTCGTCGAAGACGACACCGATACCCCTCCTCACCTCCGCGACCTCTCCGCCGCCGCTCAAATCGGCGACGCCCACGCCCTCCGTCTCGCTCTTGATAACTTGACTGGTAGTATTGATGAGCCAGTGGAGGATGGGGATACGGCTCTTCATTTGACATGTTTATATGGCCATTTGGCTTGTGTCCAGCTGCTAATAGAAAGAGGAGCAAACATTGAGGCTAAGGATGAAGAGGGTGCTATTCCTTTGCACGATGCTTGTGCAGGAGGATTTACTGAGATAGTCCAGCTGCTGCTTAACAGAGCAAATGATGCAGAACATATAAAGAGAATGCTAGAATCAGTTGATTCTGAGGGTGATACTCCTCTCCATCACGCTGCAAGAGGTGAGCATATTGATGTAATTAGGTTGCTGCTGTCTAATGGCGCATCTCCCACAAAGGCAAACTTATACGGGAAGGCCCCTGCGGATTTGCCTGAACAGGAAGATGCTCGGAGGCTGCTTGAAGCTGCAGCTCTTGCCATGGCATGCCAATAG 615 0.5106 MAVPGRRNGINDDEEELDDNALFEEQGVVEDDTDTPPHLRDLSAAAQIGDAHALRLALDNLTGSIDEPVEDGDTALHLTCLYGHLACVQLLIERGANIEAKDEEGAIPLHDACAGGFTEIVQLLLNRANDAEHIKRMLESVDSEGDTPLHHAARGEHIDVIRLLLSNGASPTKANLYGKAPADLPEQEDARRLLEAAALAMACQ* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1133 204 ProSiteProfiles Ankyrin repeat region circular profile. 144 170 - -
Gso13g1133 204 PANTHER SOWAH (DROSOPHILA) HOMOLOG 1 204 - -
Gso13g1133 204 ProSiteProfiles Ankyrin repeat profile. 144 176 IPR002110 GO:0005515
Gso13g1133 204 ProSiteProfiles Ankyrin repeat profile. 71 103 IPR002110 GO:0005515
Gso13g1133 204 Pfam Ankyrin repeats (3 copies) 104 173 IPR002110 GO:0005515
Gso13g1133 204 ProSiteProfiles Ankyrin repeat region circular profile. 71 103 - -
Gso13g1133 204 PANTHER SOWAH (DROSOPHILA) HOMOLOG 1 204 - -
Gso13g1133 204 Pfam Ankyrin repeat 71 102 IPR002110 GO:0005515
Gso13g1133 204 ProSiteProfiles Ankyrin repeat region circular profile. 104 130 - -
Gso13g1133 204 Gene3D - 36 202 IPR036770 -
Gso13g1133 204 SUPERFAMILY Ankyrin repeat 42 186 IPR036770 -
Gso13g1133 204 SMART ANK_2a 104 133 IPR002110 GO:0005515
Gso13g1133 204 SMART ANK_2a 71 100 IPR002110 GO:0005515
Gso13g1133 204 SMART ANK_2a 144 173 IPR002110 GO:0005515
Gso13g1133 204 ProSiteProfiles Ankyrin repeat profile. 104 136 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1133 Gso-Chr13 25931271 25933942 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1133 66 188 Ion Channels AT2G26650 29.932 2.25e-12 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1133 - - gmx:100527544 379.793