Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1132 ATGCAAGTCCAAGAGGAATTACTTGTGGCTTCCAAGGATCACACCCACCAAATGATGATGATCAAGGGCAAGCGAACCAAGCGTCAAAGGGCACCATCCCCTCTTAGTCTAGCCATGCCTTATAATAATTCAACCTCAAGTAGCACCAACAATTCCATTGATAGTGCCACAACCTCACCCTCTCCCACCAACACAATTGAATTGAGAGAAGACGAAGACATGGCGAATTGTCTTATTCTTCTCGCTCAAGGCAGACACCACGTGGCAGCACCAACGTCGTATCACAACAACGACAACAACGATAACCACAAGTCAACAAGCCTATACCTTTACCAGTGCAAGACTTGCAACAGATATTTCCCTTCATTCCAAGCACTTGGAGGACATAGAGCCAGTCACAAGAAGCCTAAGCAAAACGGCACCTTTTCATCAGAAGCAGTTACTACTTTTGTTGAAGAGAATAATGATCGTTATGACCCCACCACCAGTACCACCCTCTCCTTGAAAATACCAAATGGGGTTAATAATAATATGTGTAGCACAACAACAACAACAACAACAAAGGCTAAGGTTCACGAGTGTTCTATCTGTGGGGCTGAATTCTCATCAGGGCAAGCTTTGGGGGGCCACATGAGGCGCCACAGAACTCTTGTGAATGCTTCTTTAGCAACTTCTATGAGTGGTGGAAATGTTGGTGTTGGTGGTAGCAATGAATTTCAAGAAGCCAAGAAACCCTTGAAGTTGGACTTGAATCTTCCAGCACTACCAGAGGATGATCATAGAGAATCCAAGTTTTCGTTTCAGCAAAGAGAAAAAAACGTTATTGTCTTCTCTAAGCAGTCTTCTTTGGTGGATTGTCATTACTGA 867 0.4394 MQVQEELLVASKDHTHQMMMIKGKRTKRQRAPSPLSLAMPYNNSTSSSTNNSIDSATTSPSPTNTIELREDEDMANCLILLAQGRHHVAAPTSYHNNDNNDNHKSTSLYLYQCKTCNRYFPSFQALGGHRASHKKPKQNGTFSSEAVTTFVEENNDRYDPTTSTTLSLKIPNGVNNNMCSTTTTTTTKAKVHECSICGAEFSSGQALGGHMRRHRTLVNASLATSMSGGNVGVGGSNEFQEAKKPLKLDLNLPALPEDDHRESKFSFQQREKNVIVFSKQSSLVDCHY* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1132 288 ProSiteProfiles Zinc finger C2H2 type domain profile. 192 214 IPR013087 -
Gso13g1132 288 PANTHER ZINC FINGER, C2H2-LIKE PROTEIN-RELATED 16 287 - -
Gso13g1132 288 MobiDBLite consensus disorder prediction 36 63 - -
Gso13g1132 288 SMART c2h2final6 192 214 IPR013087 -
Gso13g1132 288 SMART c2h2final6 111 133 IPR013087 -
Gso13g1132 288 Gene3D Classic Zinc Finger 108 214 - -
Gso13g1132 288 ProSiteProfiles Zinc finger C2H2 type domain profile. 111 138 IPR013087 -
Gso13g1132 288 Pfam C2H2-type zinc finger 111 136 - -
Gso13g1132 288 Pfam C2H2-type zinc finger 191 215 - -
Gso13g1132 288 ProSitePatterns Zinc finger C2H2 type domain signature. 113 133 IPR013087 -
Gso13g1132 288 SUPERFAMILY beta-beta-alpha zinc fingers 110 214 IPR036236 -
Gso13g1132 288 MobiDBLite consensus disorder prediction 21 63 - -
Gso13g1132 288 ProSitePatterns Zinc finger C2H2 type domain signature. 194 214 IPR013087 -
Gso13g1132 288 PANTHER ZINC FINGER PROTEIN ZAT5 16 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1132 Gso-Chr13 25925220 25926426 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1132 17 288 C2H2 Transcription Factor Family AT2G28200 38.796 1.56e-55 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso13g1132 zf-C2H2_6 1.1e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1132 - - gmx:100815595 544.658