Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1131 ATGGCGTACCGCAGCGCCATCGTGCGCAGAGCCCAAGAGGCCAGCCACCGCGACACATGGCGAGCCGCTCTCTCCGAATTCATCTCCACACTCATCTTCGTCTTCGCCGGCTCCGGCTCCTCCGTGGCCGTCGACAAGCTCACCGTCGACAAGCCCTCCGCCCTCGTCGTCGCCGCCGTCGCACACGCCTTCGCCCTATTCGTCGCCGTCTCTGTAAGCACTAACATCTCAGGCGGCCACGTCAACCCTGCTGTTACGTTCGGCGCCTTCGTCGGCGGCAACCTCACCTTGCTCCGCTGCGTGCTCTTCTGGATCGCGCAGATTCTTGGCTCCGTCATCGCTTGCTTGCTCCTCAAATTCATCACCGGCGGACAGGATGTACCGGTTTTCAAACTTTCGAGTGGCGTGGGAGTGGGGAACGCGGTGGTGTTGGAGATGGTGATGACATTCGGGTTGGTGTACACGGTGTACGCCACCACCGTTGACCCGAGGAGCAGGAGGGGTAGTTTGGGAGTGATGGCGCCAATTGTGATTGGTTTCATCGTTGGAGCGAATGTTTTGGTGGGTGGGCCTTTTGATGGGGCATCCATGAACCCGGCTGCATCATTTGGGCCTGCAGTGGTGGGCTGGAGTTGGAAAAATCATTGGGTTTATTGGGTTGGGCCTCTCGTTGGCGGTGGGCTTGCTGGGTTTATGTATGAGCTCATCTTTGTTAGCCATAGCCGTCAGAGGTTTCGCAGAAGTTATTATTAA 753 0.5803 MAYRSAIVRRAQEASHRDTWRAALSEFISTLIFVFAGSGSSVAVDKLTVDKPSALVVAAVAHAFALFVAVSVSTNISGGHVNPAVTFGAFVGGNLTLLRCVLFWIAQILGSVIACLLLKFITGGQDVPVFKLSSGVGVGNAVVLEMVMTFGLVYTVYATTVDPRSRRGSLGVMAPIVIGFIVGANVLVGGPFDGASMNPAASFGPAVVGWSWKNHWVYWVGPLVGGGLAGFMYELIFVSHSRQRFRRSYY* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1131 250 Gene3D Glycerol uptake facilitator protein. 4 248 IPR023271 -
Gso13g1131 250 PANTHER AQUAPORIN TIP1-1 6 247 - -
Gso13g1131 250 SUPERFAMILY Aquaporin-like 13 243 IPR023271 -
Gso13g1131 250 Pfam Major intrinsic protein 14 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso13g1131 250 ProSitePatterns MIP family signature. 80 88 IPR022357 -
Gso13g1131 250 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso13g1131 250 PRINTS Major intrinsic protein family signature 62 86 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso13g1131 250 PRINTS Major intrinsic protein family signature 99 118 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso13g1131 250 PRINTS Major intrinsic protein family signature 144 162 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso13g1131 250 PRINTS Major intrinsic protein family signature 179 201 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso13g1131 250 PRINTS Major intrinsic protein family signature 216 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso13g1131 250 CDD MIP 21 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso13g1131 250 PANTHER AQUAPORIN-8 6 247 IPR034294 -
Gso13g1131 250 TIGRFAM MIP: MIP family channel proteins 25 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1131 Gso-Chr13 25916816 25918833 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1131 1 250 Major Intrinsic Protein MIP AT2G36830 66.008 8.90e-117 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1131 K09873 - gmx:100820403 476.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1544 19 44366283 44367429 Gso13g1131 13 25916816 25918833 PCT
Gso3g1567 3 41594673 41595891 Gso13g1131 13 25916816 25918833 PCT
Gso13g1131 13 25916816 25918833 Gso19g1544 19 44366283 44367429 PCT
Gso13g1131 13 25916816 25918833 Gso3g1567 3 41594673 41595891 PCT