Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1128 ATGCTCCAAACAACCTGCATTATACTCTTCTCTGTTGTGGCCATATTTTTGCCTCATGGAACAGCAATGCTCAACCTCACTCTCCCAGGACAACACCCAGACCCTGAAGCCGTTGCTCGAGAAGTTCATAGGAAAGTGAATGCTTCAATGGCAAGAAGGGAAATGCTGGGAGTGTCAGAGAAAGAGGTGGCATCATGTCTAACAGGGAATCCCATAGATGATTGTTGGAAATGTGACCCAGATTGGGCCAACAACAGGCAGAGGCTAGCAGATTGTGCAATAGGGTTCGGGCAGAACGCAAAGGGAGGAAAAGGTGGCCAATTTTACATAGTCACTGATTCCTCAGATGAGGACCCTGTGAACCCAAAACCTGGAACACTTAGATATGCAGTGATACAGAACGAGCCACTGTGGATAGTGTTCCCCAGTAACATGATGATTAAGCTGTCTCAAGAACTCATTTTTAATAGCTACAAGACCATTGATGGGCGTGGAGCTGACGTGCACATTGTGGGTGGAGGCTGCATTACTCTTCAGTATATTAGCAATGTCATTATTCACAACATTCACATCCACCATTGCCATCCCTCTGGCAACGCTAACGTGCGGTCGAGCCCGGAACATTATGGGTACCGCACGGAGTCGGACGGCGACGGGATCTCCATCTTCGGCTCGCGTGACATTTGGATCGACCACTGCACCCTCTCCCGGTGCAAGGACGGCCTGATCGATGCAGTGATGGGTTCCAGCGCTATCACGATCTCCAACAACCACTTCTCCCACCACAATGACGTGATGCTCCTGGGCCACAGCGACCACTACCTCCCAGACTCCGGCATGCAGGTGACCATTGGCTTCAACCACTTCGGGGAGGGCCTCGTCCAGCGCATGCCGCGTTGCCGACGAGGTTACATCCACGTGGTGAACAATGACTTCACACGATGGGAGATGTACGCCATCGGCGGCAGTGCGGGACCCACCATTAACAGCCAGGGAAACCGCTACACCGCGCCGGAGGATCCGTACGCGAAGCAGGTTACGAAGAGGCTGGATGCCGGAGAAGGGGAGTGGAGCGGGTGGAATTGGCGGTCCGAAGGGGATGTTTTGTTGAATGGCGCGTTCTTCGTTGCTTCGGGAGCAGTTGCTGAACCTAACTATCAGAACGCCTACAGCACCCAACCTAAGAACGTGGATCGCATTTCGCTTCTCACTATGTCCGCCGGTGTTCTCGGCGTTGCTAGGGACAATAATCTGGGAATGTGGATCAGAGGACCCAACGATGGCACTGTATATTTTTCAGATTCTGGCCCAGAATACACAGACGAAATGTCCCGGAGTACAATGCCGTTGCTACCTTCACGTATTTTGATTCTTGTATCTGCACTCTTATGCTTCTTAGGTCATACAACAACCTTAACAACACTACCCAATTAG 1434 0.516 MLQTTCIILFSVVAIFLPHGTAMLNLTLPGQHPDPEAVAREVHRKVNASMARREMLGVSEKEVASCLTGNPIDDCWKCDPDWANNRQRLADCAIGFGQNAKGGKGGQFYIVTDSSDEDPVNPKPGTLRYAVIQNEPLWIVFPSNMMIKLSQELIFNSYKTIDGRGADVHIVGGGCITLQYISNVIIHNIHIHHCHPSGNANVRSSPEHYGYRTESDGDGISIFGSRDIWIDHCTLSRCKDGLIDAVMGSSAITISNNHFSHHNDVMLLGHSDHYLPDSGMQVTIGFNHFGEGLVQRMPRCRRGYIHVVNNDFTRWEMYAIGGSAGPTINSQGNRYTAPEDPYAKQVTKRLDAGEGEWSGWNWRSEGDVLLNGAFFVASGAVAEPNYQNAYSTQPKNVDRISLLTMSAGVLGVARDNNLGMWIRGPNDGTVYFSDSGPEYTDEMSRSTMPLLPSRILILVSALLCFLGHTTTLTTLPN* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1128 477 Gene3D - 69 411 IPR012334 -
Gso13g1128 477 SMART amb_all 144 341 IPR002022 -
Gso13g1128 477 Pfam Pectate lyase 153 322 IPR002022 -
Gso13g1128 477 PANTHER PECTATE LYASE 1 434 - -
Gso13g1128 477 PRINTS Pollen allergen Amb family signature 92 109 IPR018082 -
Gso13g1128 477 PRINTS Pollen allergen Amb family signature 116 141 IPR018082 -
Gso13g1128 477 PRINTS Pollen allergen Amb family signature 152 168 IPR018082 -
Gso13g1128 477 PRINTS Pollen allergen Amb family signature 216 237 IPR018082 -
Gso13g1128 477 PRINTS Pollen allergen Amb family signature 296 315 IPR018082 -
Gso13g1128 477 PRINTS Pollen allergen Amb family signature 318 337 IPR018082 -
Gso13g1128 477 PRINTS Pollen allergen Amb family signature 360 384 IPR018082 -
Gso13g1128 477 PRINTS Pollen allergen Amb family signature 389 412 IPR018082 -
Gso13g1128 477 PANTHER PECTATE LYASE 18-RELATED 1 434 IPR045032 GO:0030570
Gso13g1128 477 SUPERFAMILY Pectin lyase-like 60 382 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1128 Gso-Chr13 25885185 25890682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1128 1 462 Polysaccharide Lyase AT3G53190 70.851 0.0 657
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1128 K01728 - gmx:100815062 976.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1562 3 41549755 41553379 Gso13g1128 13 25885185 25890682 PCT
Gso13g1128 13 25885185 25890682 Gso3g1562 3 41549755 41553379 PCT