Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1127 ATGCAAGGAGAAAATTTGCGTAAAGGGACTTGGCTCCAAGAGGAAGATGAACAATTGACTAGCTTTGTGGCCCGTCTTGGGGAAAGAAGGTGGGATTCCCTTGCCAAAGTAGCTGGCCTTAAGAGAAGTGGTAAAAGCTGTAGGTTAAGATGGATGAACTATCTTCGTCCAAATCTCAAGCATGGTCATTTTAGTGTTGAAGAAGAGCAGCTTATTGTTCAGCTTCAGCAGGAATTGGGTAACAAGAGATTTTAA 255 0.4275 MQGENLRKGTWLQEEDEQLTSFVARLGERRWDSLAKVAGLKRSGKSCRLRWMNYLRPNLKHGHFSVEEEQLIVQLQQELGNKRF* 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1127 84 Gene3D - 1 61 - -
Gso13g1127 84 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 82 - -
Gso13g1127 84 SUPERFAMILY Homeodomain-like 9 82 IPR009057 -
Gso13g1127 84 SMART sant 7 57 IPR001005 -
Gso13g1127 84 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 3 59 IPR017930 -
Gso13g1127 84 CDD SANT 10 55 IPR001005 -
Gso13g1127 84 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Gso13g1127 84 ProSiteProfiles Myb-like domain profile. 3 55 IPR001005 -
Gso13g1127 84 PANTHER MYB TRANSCRIPTION FACTOR 2 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1127 Gso-Chr13 25878764 25880220 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1127 6 82 MYB Transcription Factor Family AT1G57560 58.442 1.82e-27 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso13g1127 Myb_DNA-binding 2.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1127 K09422 - gmx:100814530 164.081