Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1119 ATGACACAAGAAGGAAATGGCAACACCAACTTCTGTATGAGTGTTAACAACAACGGCTACATTAGCGCTAATGACCCGTTGAACTGGGGCGCGGCGGCGGAGGCGATGGCCGGGAGCCACCTCGACGAGGTCAAGCGCATGGTGGAGGAGTACCGGAGGCCGGTCGTGAAGCTCGGCGGCGAGACCCTGACGATCTCGCAGGTGGCGGCGATCGCGGCGCACGACCAGGGGGTGAAGGTGGAGCTGGCGGAGTCCTCCAGGGCCGGGGTTAAGGCCAGCAGCGACTGGGTGATGGAGAGCATGGACAAGGGCACTGACAGCTACGGCGTCACCACTGGGTTCGGTGCTACCTCCCACCGGAGAACCAAACAAGGCGGTGCCTTGCAGAAGGAGCTAATTAGGTTTTTGAATGCTGGAATATTTGGCAATGGTACAGAGTCCAATTGCACCCTACCCCACACAGCAACCAGAGCAGCTATGCTAGTGAGAATCAACACACTCCTCCAAGGCTACTCAGGAATTAGGTTTGAAATTTTGGAGGCAATCACAAAGCTTCTGAACAATAACATTACCCCATGTTTGCCACTTAGGGGAACAATCACAGCATCTGGTGACCTTGTTCCTTTGTCCTACATTGCTGGTTTGCTAACTGGTAGACCAAACTCCAAGGCTGTTGGACCCTCTGGTGAAATTCTGAATGCCAAAGAAGCCTTTGAATTGGCCAACATTAGTGCTGAGTTCTTTGAGTTGCAACCTAAGGAAGGCCTTGCCCTTGTGAATGGCACTGCTGTTGGTTCTGGCTTGGCTTCAATTGTTCTTTTTGAAGCCAACATCATTGCTGTCTTGTCTGAGGTTATTTCAGCAATTTTTGCTGAAGTGATGCAAGGGAAGCCAGAGTTCACTGACCATTTGACTCATAAACTAAAGCACCACCCTGGACAGATTGAAGCTGCTGCTATCATGGAACACATTTTGGAAGGAAGCTCTTACATCAAAGCTGCTAAGAAGTTGCATGAGATTGATCCTTTGCAAAAGCCTAAACAAGACCGCTATGCACTTAGGACTTCACCACAATGGCTTGGTCCTCAAATTGAAGTGATTAGATTCTCTACCAAGTCAATTGAGAGGGAGATAAACTCAGTCAATGACAACCCTTTGATTGATGTCTCAAGGAACAAGGCCCTTCATGGTGGTAACTTCCAAGGAACACCTATTGGAGTGTCCATGGATAACACCCGTTTGGCTCTTGCATCAATTGGCAAGCTCATGTTTGCTCAATTCTCTGAGCTTGTCAATGACTATTACAACAATGGGTTGCCCTCAAATCTCACTGCCAGCAGAAACCCCAGCTTGGATTATGGATTCAAGGGAGCTGAAATTGCAATGGCCTCTTATTGCTCTGAACTCCAATACTTGGCGAACCCGGTGACGAGCCACGTGCAAAGCGCCGAGCAACACAACCAAGATGTGAACTCTCTCGGGCTGATTTCATCAAGGAAGACACATGAGGCTATTGAGATCCTCAAGCTCATGTCCTCCACTTTCCTCATTGCACTTTGCCAAGCCATTGACTTGAGGCATTTGGAGGAGAATTTGAAGAACACGGTGAAGAACGTTGTGAGCCAAGTTGCTAAACGGACTCTCACCACAGGTGTCAATGGAGAGCTTCACCCTTCAAGGTTTTGTGAGAAGGACTTGCTCAAGGTTGTTGATAGGGAGTACACATTTGCATACATTGATGACCCCTGCAGTGGCACATACCCTTTGATGCAAAAGCTGAGGCAAGTGCTTGTGGACTATGCATTGGCCAATGGGGAGAACGAGAAGAACACGAACACATCAATCTTCCAAAAGATCGCAACATTTGAGGAGGAGTTGAAGACCCTTTTGCCTAAGGAAGTGGAAGGTGCAAGAGTTGCATATGAGAATGACCAATGTGCTATTCCCAACAAGATCAAGGAATGCAGGTCTTACCCCTTGTACAAGTTTGTGAGAGAGGAGTTGGGGACAGCATTGCTTACTGGTGAAAGGGTTGTCTCACCGGGTGAAGAGTGTGACAAAGTTTTTACTGCTATGTGCCAAGGGAAGATCATTGATCCACTTTTGGAATGCCTTGGAGAGTGGAATGGTGCTCCACTTCCAATTTGTTAG 2151 0.4844 MTQEGNGNTNFCMSVNNNGYISANDPLNWGAAAEAMAGSHLDEVKRMVEEYRRPVVKLGGETLTISQVAAIAAHDQGVKVELAESSRAGVKASSDWVMESMDKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESNCTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGEILNAKEAFELANISAEFFELQPKEGLALVNGTAVGSGLASIVLFEANIIAVLSEVISAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILEGSSYIKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDYYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTHEAIEILKLMSSTFLIALCQAIDLRHLEENLKNTVKNVVSQVAKRTLTTGVNGELHPSRFCEKDLLKVVDREYTFAYIDDPCSGTYPLMQKLRQVLVDYALANGENEKNTNTSIFQKIATFEEELKTLLPKEVEGARVAYENDQCAIPNKIKECRSYPLYKFVREELGTALLTGERVVSPGEECDKVFTAMCQGKIIDPLLECLGEWNGAPLPIC* 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1119 716 Gene3D - 16 262 IPR024083 -
Gso13g1119 716 SUPERFAMILY L-aspartase-like 25 716 IPR008948 GO:0003824
Gso13g1119 716 CDD PAL-HAL 61 526 IPR001106 -
Gso13g1119 716 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 17 716 - -
Gso13g1119 716 Gene3D Fumarase/aspartase (Central domain) 263 711 - -
Gso13g1119 716 PANTHER HISTIDINE AMMONIA-LYASE 17 716 IPR001106 -
Gso13g1119 716 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 25 705 IPR005922 GO:0005737|GO:0006559|GO:0016841
Gso13g1119 716 Gene3D - 529 650 IPR023144 -
Gso13g1119 716 Pfam Aromatic amino acid lyase 63 543 IPR001106 -
Gso13g1119 716 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 198 214 IPR022313 GO:0016841
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1119 Gso-Chr13 25754713 25759804 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1119 18 716 Monolignol Biosynthesis Gene Families AT2G37040 83.405 0.0 1239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1119 K10775 - gmx:100803857 1419.06