Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1114 ATGAGGAACTGTGCCTCATGGCTCCCTCTTCTCTTCTCGTTGATCCCTCTCTTCGCGTCGCGGATTCAGTGCGCCGATAACAATTTTGCACCCTCCTTTTACTCCGAAGAAATCTACAAGGAGCTTGAAAGCCTCGCTTCCCTGTTAAACAAGGACATTAAAGCAGGTTTAGGTTTCTGCATCAAGGATGTGAATAAAGATTGGGAGGAAGCATTTGATTTTAAAGGAAGGTTGGATTTCGTGGATTCTTGTGTTAAGAAAAAAGGAGATTTCAGAGATAGAATATGTACTGTGGCTGAAATAAGGTACTACTTCCACGGTTTCTTGGCAGAAGGGGCCTCATCTGCCAATTACGTAAAACCTAACAAGAATTGCAATTTGACCTCATGGGTTTCTGGTTGTGAACCTGGATGGAGTTGTAGTGCTGGAAAAAATGTTGACCTCAAAAAGGACATAAAGGAAATTCCTTTTAGAACCAGTAACTGTCAGCCTTGTTGTGAAGGGTTTTTTTGCCCTCAAGGATTGACTTGTATGATACCTTGCCCACTAGGTTCTTATTGTCCACTTGCAAAACTGAACAATTCGACCGGAATATGTGACCCATATAGTTACCAGATACCACAGGGAGAAACAAATCATACTTGTGGCGGTGCTGATATTTGGTCTGGTGTGGTGAACAATAGTGATATCTTTTGTTCTCCAGGGTCCTACTGCCCGACTACAACACGCAAAGTTTCTTGTGACAGTGGATATTATTGCAGGATGGGTTCTACTCACCAAAATCCATGCTCCAAGTTGAGTACCTGTAATCCAAACACAGCAACCCAAAATATGCATGCTTATGGCGCTTTGATTATTGTTGCATTGAGTACTCTCTTGATCTTCATTTATAATTGTTCTGATCAAGTTCTAGTTACTCGAGAAAGGAGAAAGGCTAAATCCAGGGAATCAGCTGCTAGACAAGTAAGAGAAACTGTACAGGCTCGAGAAAGGTGGAAAATAGCAAAAGATGTTGCTAAGAAAGGTAGAGGGGGATTGCAAGAGCAATTATCTCGCACTTTTTCTCGCAAAAAATCAGTAAAGCAATCAGATCATTCTAGCCAAGCTAAACGTGGTACGGGTGATACATTTTTGCCACCAATGCCTCCAAATTCTTCAAGCTTATATGAGCAGCCATCTGCAGCTTTAAAAGCACAAAACAAGGAACCTACCAACCTTACTAAAATGTTGAATTCCCTCGAGGATGATCCCCACAGCAATGAAGGATTCAATCTACAAATTGGAGATAAAAATATTAAAAAGCAGATGCCAAAGGGCAAGAATTTACATACACAAAGCCAGATTTTAAGGTATGCTTATGGTCAGATTGAGAAGGAGAAAGCTCAACAAGAGAAAAACAAGAACTTGACTTTCTCAGGAGTTATTTCAATGGCTACTGAAGGCGATGTTCGAACAAGGCCTGTGATTGAGGTAGCTTTTAAGGATTTAACTCTTACTTTGAAAGGTAAAAGAAAACATATAATGAGATGTGTGACTGGTAAACTAATGCCGGGTCGAGTTTCTGCTGTGATGGGTCCCTCTGGAGCCGGCAAAACTACATTTCTTTCTGCCTTGGCAGGGAAGGCAAGAGGATGCACGATGACAGGCTCAATTCTAATCAATGGAAAGCCCGAATCCATTCATTGTTATCAGAAAATTATTGGTTATGTGCCACAAGATGATATTGTGCATGGGAACTTGACAGTGGAGGAAAATCTTCGTTTCAGCGCAAGATGCAGACTGTCTGCGGATATGCCAAAACCAGATAAGGTTCTGATTGTTGAAAGAGTAATTGAGTCCTTAGGACTCCAGGCAGTGAGGGATTCCCTTGTTGGGACAGTAGAGAAGAGAGGTATATCTGGAGGGCAACGAAAGCGTGTAAATGTAGGGATGGAGATGGTTATGGAGCCTTCATTATTAATCTTAGATGAGCCTACAACTGGCCTAGACAGTGCATCTTCCACTTTACTACTTAAAGCACTTCGTCGCGAAGCACTTGAAGGTGTAAATATATGCATGGTACTTCACCAACCAAGCTATACTTTGTTCAGAATGTTTGATGATATAATCTTTCTAGCCAAAGGTGGCCTTACTGCATATCATGGTCCTGTTAAAAAGGTAGAAGAATACTTTGCTGGCATTGGAATCACTGTACCCGATCGCGTGAATCCTCCGGACCATTTCATCGACATTTTGGAAGGTTTAGTGAAACCAAATGGAAATGTGACCCATCAACAACTTCCTGTTAGATGGATGTTACATAATAGTTACCCAGTACCACCAGACATGCTTCATTTTGCTGATCAAATTGCTGCCACCTCCTCCTCCTCCTCCTCCTCAAATACAAATCATGCAATAAAGGGCACAGATGAAGTTGTTGATCAATCCTTTGCTGGAGAGTTTTGGGAGGATATGAAGAGTAATGTTCAGATGCAACGAGATCATCTAGAGGCAACCTTCTTAAAGACTAAGGACTTATCAAATCGAAGAGCTCCGGGCGTAGCTCGACAATATAGATATTACCTTGGGCGGATTTGTAAGCAGACGCTACGAGAAGGAAAATCACAAGCAGTTGACTACCTCCTTTTGTTAGTTGCTGGTGCTATATTAGGAACTCTTACTAAAGTTAATGACGAAACATTTGGTTCCCTTGGATATACCTATACTGTTATTGCTGTCTCTTTACTTTGCAAGATTGCAGCACTCAGAGCATTTTCTCTGGATAAATTACAATACTGGAGGGAGAGTGCATCTGGAATTAGTAGTCTGGCTCATTTTTTGGCCAAAGATACAATAGAACTGTTCAATATAATCATCAAACCTGTAGTTTATCTGTCCATGTTCTATTTTTTTAGCAATCCAAGGTCAAGCTTTGCAAGTAATTATGCAGTTTTGGTCTGCCTTGTGTACTGTGTAACTGGCATGGCTTATGCAATAGCAATTTATTTTGAGCCTGCTCCAGCACAACTGTGGTCAGTGCTTCTCCCAGTTGTTATGACTCTTATTGCCAACCAAACAAGAGATACTGTCTTTATGAAGGTCCTCATAAAGTTGTGCTACCCAAATTGGGCTTTGGAGGCCTTTATCATTGCAAATGCTGAAAGGTTTACTGGAGTCTGGCTGATAACTCGGTGTAGTTCACTAATGAACAGTGGCTATAATGTCAGCGACGGGCCTCTTTGTCTGGTTGTCCTCATTCTTTACGGTATAATTGCTCGAGTTGTGGCCTTCTTTTGTCTAGTGATCACTCAAAAGAAGTGA 3300 0.4139 MRNCASWLPLLFSLIPLFASRIQCADNNFAPSFYSEEIYKELESLASLLNKDIKAGLGFCIKDVNKDWEEAFDFKGRLDFVDSCVKKKGDFRDRICTVAEIRYYFHGFLAEGASSANYVKPNKNCNLTSWVSGCEPGWSCSAGKNVDLKKDIKEIPFRTSNCQPCCEGFFCPQGLTCMIPCPLGSYCPLAKLNNSTGICDPYSYQIPQGETNHTCGGADIWSGVVNNSDIFCSPGSYCPTTTRKVSCDSGYYCRMGSTHQNPCSKLSTCNPNTATQNMHAYGALIIVALSTLLIFIYNCSDQVLVTRERRKAKSRESAARQVRETVQARERWKIAKDVAKKGRGGLQEQLSRTFSRKKSVKQSDHSSQAKRGTGDTFLPPMPPNSSSLYEQPSAALKAQNKEPTNLTKMLNSLEDDPHSNEGFNLQIGDKNIKKQMPKGKNLHTQSQILRYAYGQIEKEKAQQEKNKNLTFSGVISMATEGDVRTRPVIEVAFKDLTLTLKGKRKHIMRCVTGKLMPGRVSAVMGPSGAGKTTFLSALAGKARGCTMTGSILINGKPESIHCYQKIIGYVPQDDIVHGNLTVEENLRFSARCRLSADMPKPDKVLIVERVIESLGLQAVRDSLVGTVEKRGISGGQRKRVNVGMEMVMEPSLLILDEPTTGLDSASSTLLLKALRREALEGVNICMVLHQPSYTLFRMFDDIIFLAKGGLTAYHGPVKKVEEYFAGIGITVPDRVNPPDHFIDILEGLVKPNGNVTHQQLPVRWMLHNSYPVPPDMLHFADQIAATSSSSSSSNTNHAIKGTDEVVDQSFAGEFWEDMKSNVQMQRDHLEATFLKTKDLSNRRAPGVARQYRYYLGRICKQTLREGKSQAVDYLLLLVAGAILGTLTKVNDETFGSLGYTYTVIAVSLLCKIAALRAFSLDKLQYWRESASGISSLAHFLAKDTIELFNIIIKPVVYLSMFYFFSNPRSSFASNYAVLVCLVYCVTGMAYAIAIYFEPAPAQLWSVLLPVVMTLIANQTRDTVFMKVLIKLCYPNWALEAFIIANAERFTGVWLITRCSSLMNSGYNVSDGPLCLVVLILYGIIARVVAFFCLVITQKK* 1100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1114 1099 ProSitePatterns ABC transporters family signature. 632 646 IPR017871 GO:0005524
Gso13g1114 1099 Gene3D - 482 727 IPR027417 -
Gso13g1114 1099 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 491 732 IPR003439 GO:0005524
Gso13g1114 1099 Pfam ABC-2 type transporter 689 1099 IPR043926 GO:0140359
Gso13g1114 1099 PANTHER WHITE-BROWN COMPLEX HOMOLOG PROTEIN 30-RELATED 28 1095 - -
Gso13g1114 1099 MobiDBLite consensus disorder prediction 366 389 - -
Gso13g1114 1099 Pfam ABC transporter 511 659 IPR003439 GO:0005524
Gso13g1114 1099 CDD ABCG_EPDR 489 715 - -
Gso13g1114 1099 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 28 1095 - -
Gso13g1114 1099 SMART AAA_5 517 709 IPR003593 -
Gso13g1114 1099 MobiDBLite consensus disorder prediction 339 389 - -
Gso13g1114 1099 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 491 714 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1114 Gso-Chr13 25706356 25718009 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1114 518 711 Calmodulin-binding Proteins AT2G36910 28.218 1.54e-09 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1114 - - gmx:100812387 2192.54