Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1113 ATGCAATGGCTTAATTGGGTCTTCTCTTCTCAGAATCTGGGTACCAAAAACAGAAGAGAAAAAAGGGGATTTTTGGTTTTGTTGAGCTCAGAGAAGCTGAGGCTTTTTGGGATCAAACTATATCTGTTTGAACTTGAGTCTAGTTCAAGTCAGGTTGCAATGAAGTGTTTTCCATTCTACTTTGGAGAGAAGAAGGATGGTCCTAAGAGCTTGCAGTCAATATCGGGCCAGTCTAACAGTTCTACTTATGTTGAGGCTGAGATGAGAAGATCTGGTTCTGAATTGAACTCTATGGATGCCTCAGATAACAGCACAGACTCACTCAGGAGAAGTGCATTTCCCAGTTTGTCTCAAAGACCCAGCAACCTCAGAGAATTTACTGTATCTGAACTGAAAACAGCCACAAAGAGTTTTAGTCGCTCAGTCATGCTTGGAGAAGGTGGGTTTGGGTGTGTCTACAAGGGGTTGATCAAGAGTGTAGATGATCCTTCCACAAAAATTGAAGTTGCAGTTAAACAACTTGGCAGAAGAGGAATTCAGGGGCATAAGGAATGGGTGACAGAAGTGAATGTTCTGGGTATTGTGGAGCATCCCAATCTGGTGAAACTAGTGGGATACTGCGCTGATGATGATGAAAGAGGAATCCAGCGGCTTCTGATTTATGAATATATGCCTAACAGAAGTGTGGAACACCATTTATCGCCACGATCAGACACTCCTCTGCCATGGAGTAGGAGGTTGAAAATAGCCCAAGATGCAGCTCGTGGCTTGACATACCTGCATGAGGAAATGGATTTTCAGATAATTTTCAGAGATTTCAAATCTTCAAATATCCTTCTGGACGAGCTGTGGAATGCAAAACTATCAGACTTCGGGCTAGCTAGATTGGGACCATCTGATGGGCTGACTCATGTCTCCACAGCGGTCGTAGGAACAATGGGTTATGCAGCTCCAGAATATGTTCAAACTGGACGTCTCACGTCAAAGAGTGATGTATGGAGCTATGGTGTCTTCCTTTATGAACTCATCACTGGCCGCCGTCCAATTGATCGAAATCGCCCCAAGGGTGAGCAGAAGCTGTTGGAATGGGTAAGGCCATACCTTTCAGATGGGAGGAGATTTCAACTAATATTGGATCCAAGACTTGAGAGAAGACACATCCTCAAGTCAGCTCAAAAACTTGCTATAATAGCTAACAGATGCTTGGTTAGAAACCCAAAGAATCGCCCGAAGATGAGTGAAGTGTTGGAAATGGTGACTCGGGTTGTGGAGTCTTCAGTGAGTACTAATCTACAGCCACCCTTGAAGAGTGTAGCCTCAGCAGAAGCTTCTCAGGCTGCTGAAATAAAGAACAAAAAAGTGACCATGGATCAAAACCCAGATTGCAATTGGTTAAGGATGTGGAGGCCAAAGCTTTTAAGAGCATTAGATTGTTGTAGCTTTAAAGTTTAA 1452 0.436 MQWLNWVFSSQNLGTKNRREKRGFLVLLSSEKLRLFGIKLYLFELESSSSQVAMKCFPFYFGEKKDGPKSLQSISGQSNSSTYVEAEMRRSGSELNSMDASDNSTDSLRRSAFPSLSQRPSNLREFTVSELKTATKSFSRSVMLGEGGFGCVYKGLIKSVDDPSTKIEVAVKQLGRRGIQGHKEWVTEVNVLGIVEHPNLVKLVGYCADDDERGIQRLLIYEYMPNRSVEHHLSPRSDTPLPWSRRLKIAQDAARGLTYLHEEMDFQIIFRDFKSSNILLDELWNAKLSDFGLARLGPSDGLTHVSTAVVGTMGYAAPEYVQTGRLTSKSDVWSYGVFLYELITGRRPIDRNRPKGEQKLLEWVRPYLSDGRRFQLILDPRLERRHILKSAQKLAIIANRCLVRNPKNRPKMSEVLEMVTRVVESSVSTNLQPPLKSVASAEASQAAEIKNKKVTMDQNPDCNWLRMWRPKLLRALDCCSFKV* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1113 483 MobiDBLite consensus disorder prediction 70 87 - -
Gso13g1113 483 SUPERFAMILY Protein kinase-like (PK-like) 114 419 IPR011009 -
Gso13g1113 483 MobiDBLite consensus disorder prediction 66 114 - -
Gso13g1113 483 PANTHER OS01G0588500 PROTEIN-RELATED 57 461 - -
Gso13g1113 483 ProSitePatterns Protein kinases ATP-binding region signature. 144 172 IPR017441 GO:0005524
Gso13g1113 483 Pfam Protein tyrosine and serine/threonine kinase 143 417 IPR001245 GO:0004672|GO:0006468
Gso13g1113 483 CDD STKc_IRAK 144 421 - -
Gso13g1113 483 ProSiteProfiles Protein kinase domain profile. 138 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g1113 483 Gene3D Transferase(Phosphotransferase) domain 1 224 439 - -
Gso13g1113 483 MobiDBLite consensus disorder prediction 94 114 - -
Gso13g1113 483 PANTHER KINASE 1B 57 461 - -
Gso13g1113 483 Gene3D Phosphorylase Kinase; domain 1 118 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1113 Gso-Chr13 25698016 25702200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1113 54 455 Glycoside Hydrolase AT3G07070 42.619 2.56e-94 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gso13g1113 PK_Tyr_Ser-Thr 4.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1113 - - gmx:100305438 940.643