Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1111 ATGACCTCACAAGTTGTCCTACACAACAATTTCGAAACCAAACCCTCCGCCACCGTCACCACCATCGTCGAGTCCCCATCCGTCGCGCCGCCATCGCTCGCCGTCGCGAAGAGACCTTCCACCAAGGACCGCCACACCAAGGTCAACGGCCGCGGCCGCCGCGTCCGCATGCCGCCGCTCTGCGCCGCGCGCATTTTCCAGCTCACGCGCGAGCTCGGCCACCGATCCGACGGCGAGACCATCGAGTGGCTCCTCCGCCATGCCGAGACCTCCATTATAGCCGCTACCGGCTCCGGCACCGTCCCCGCCGCCCCCGTCTCCTCCGTTGGGCCCTCCGCTCCCTCCTCCGAGCCCATGGTCGCCTGCCCCGTCACGGCGGTCGGCGCTCAGGGAATGTTCGCCGTGCCGCCGCAGCCGAGTTGCCGGCTCGACCTTTCCCCGCCGCCTGGGATGGAGTTCGCGGTGAACGGTTACCGGCACATGCCGTTCACTGCGCTTCTGTTGCAGCCGGCGACGGCGGACGAAAATCAGAACGACGAGTCTCTCGGCGAACAATGA 558 0.672 MTSQVVLHNNFETKPSATVTTIVESPSVAPPSLAVAKRPSTKDRHTKVNGRGRRVRMPPLCAARIFQLTRELGHRSDGETIEWLLRHAETSIIAATGSGTVPAAPVSSVGPSAPSSEPMVACPVTAVGAQGMFAVPPQPSCRLDLSPPPGMEFAVNGYRHMPFTALLLQPATADENQNDESLGEQ* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1111 185 Pfam TCP family transcription factor 40 115 IPR017887 -
Gso13g1111 185 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 29 115 IPR005333 GO:0003700
Gso13g1111 185 ProSiteProfiles TCP domain profile. 41 95 IPR017887 -
Gso13g1111 185 MobiDBLite consensus disorder prediction 30 50 - -
Gso13g1111 185 PANTHER TRANSCRIPTION FACTOR TCP16-RELATED 29 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1111 Gso-Chr13 25672738 25673667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1111 41 172 TCP Transcription Factor Family AT2G37000 59.091 8.77e-46 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Gso13g1111 TCP 1.3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1111 - - gmx:100811316 360.147