Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1093 ATGGGAAGAGCTCCTTGTTGTGACAAGGCCAATGTAAAGAAAGGGCCATGGAGTCCTGAAGAAGATGAAAAGCTAAGAGAGTACATAGAGAAAAATGGAACTGGAGGGAACTGGATTGCTCTCCCACAAAAAGCTGGTTTGAAAAGATGTGGGAAGAGTTGTAGACTCAGATGGCTTAATTATCTCAGACCAAACCTTAAGCATGGGGAGTTTTCTGAAGATGAAGACAGAATAATCTGCACTCTCTATGCTAGCATTGGAAGCAGGTGGTCAATAATAGCATCTCAGTTGCCAGGAAGGACAGACAATGATATCAAGAACTATTGGAACACCAAGCTCAAGAAAAAAATGATGGGAATGAACCCTTCAGCACTGAAGAAACCACACCAAGTTAACCTTTCACCCATGCTTCAAAACTCAACACCATCATCATCTTTCAAAAACAACCACAACTCTTATTTCCAGCCCCATTTGCCCTTCACAGGCTCTGAGTCCATTTCATATTCAAGTCTTCCGAGTGACAATTATTCCACTTTTGAGAGCCTTCAGAATTACCAAGTTAGTAGTGTCTTTATGGAAACAAGTTGCAGCTCTTCTTCAGATGGAAGCTGCAACAACAATCAGATCAATCATGTCAAGGAAGCAGAACTTGGATATGTTGGTGATGGAACTTTTGGTGACCAGATAATAGGTCGTCTAAGTTACCTCAATAGTGGGGTGGAAGATCAAGATACCCTAAAGTTGGTGCCCTCCAATGCTGGTAGGGTTAGTGGGGTGACAGATGAAGAAACTAGATTATGGGGAGAAAGTCCATTAGAGTATGGTCTAGAAGAAATTAAACAGCTAATAAGCAATAGTAGTTGCAACAACTTTATGCTTGATGACAGCAAGACTGGGGAAATGGTCATGTACTACTGA 918 0.415 MGRAPCCDKANVKKGPWSPEEDEKLREYIEKNGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNLKHGEFSEDEDRIICTLYASIGSRWSIIASQLPGRTDNDIKNYWNTKLKKKMMGMNPSALKKPHQVNLSPMLQNSTPSSSFKNNHNSYFQPHLPFTGSESISYSSLPSDNYSTFESLQNYQVSSVFMETSCSSSSDGSCNNNQINHVKEAELGYVGDGTFGDQIIGRLSYLNSGVEDQDTLKLVPSNAGRVSGVTDEETRLWGESPLEYGLEEIKQLISNSSCNNFMLDDSKTGEMVMYY* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1093 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Gso13g1093 305 PANTHER OS09G0431300 PROTEIN 1 290 - -
Gso13g1093 305 Gene3D - 69 148 - -
Gso13g1093 305 CDD SANT 16 62 IPR001005 -
Gso13g1093 305 SMART sant 67 115 IPR001005 -
Gso13g1093 305 SMART sant 13 64 IPR001005 -
Gso13g1093 305 Gene3D - 7 68 - -
Gso13g1093 305 PANTHER TRANSCRIPTION FACTOR RAX3 1 290 - -
Gso13g1093 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Gso13g1093 305 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Gso13g1093 305 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Gso13g1093 305 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Gso13g1093 305 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Gso13g1093 305 CDD SANT 70 113 IPR001005 -
Gso13g1093 305 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1093 Gso-Chr13 25439483 25441633 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1093 1 119 MYB Transcription Factor Family AT5G57620 87.395 2.53e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso13g1093 Myb_DNA-binding 3.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1093 K09422 - gmx:100794828 627.861