Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1089 ATGGAGATCACGAGCAGCCATAGCAGCGGCAGCATGATGTGGTTTTTCAAAGATAAGGGCTTTGATGACAACAGTGTGCAAGGAATGTTCCGAAAGTGCCGGCGCCTCGAGGGTGTGCATCAGGAAAGAGCAAGTGAGAATTGGGACTATTTGAGAAGCATTGGCATTGAGGAAAGGAAACTGCCCTCAATTGTTTCGAAATGCCCCAAAATTCTTGCACTAGATCTTTATGAGAAGATTGTGCCCACTGTTGAGTGTCTCAGGACATTAGGAACAAAACCTAATGAGGTTGCTTCTGCCATAGCAAAGTTCCCTCATATACTCTCAAACAGTGTGGAAGAGAAGCTTTGTCCCCTTTTGGCATTCTTTCAGACTCTAGGTATCCCTGAAAAGCAAATTGGGAAAATGATACTGCTCAACCCTAGGCTTATTAGTTACAGCATTGAAACAAAGCTGACGGAAATTGTGAACTTCCTTGTGAACCTTGGTCTCAGTAAGGATGGAATGATCGGAAAAGTTATAGTCAGGGACCCGTATATTATGGGTTATAGTGTCGATAAGAGGCTTCGCCCTACTTCAGATTTTCTGAAGTCAATAGGGCTGAGTGAGGCAGATCTTCAAGCGGTGGCTGTGAACTTCCCAGGAATCTTGAGTAGAGATGTGAACAAGCTTTTGGTACCCAATTATGCGTATCTAAAGAAACGTGGATTTGAAGAGAGACAGATAGTTGCTTTGGTGGTTGGTTTTCCTCCTATTCTGATCAAGAGCATTCAGAATTCGTTAGAACCGAGGATCAAGTTTTTAGTAGATGTAATGGGGAGACAAGTTGATGAAGTCATTGATTATCCTTGCTTCTTTCGGCATGGCCTGAAGAGAAGAATAGAGCCACGATACAAACTTCTAAAGGAGAGGAGTTTAAATTGTAGCTTGAGTGAAATGTTGGATTGTAATAGGAAGAAGTTCTTCATGAAGTTTGGCTTGTTAGAAGGCCATGCCTTGAGTAACTAG 1008 0.4266 MEITSSHSSGSMMWFFKDKGFDDNSVQGMFRKCRRLEGVHQERASENWDYLRSIGIEERKLPSIVSKCPKILALDLYEKIVPTVECLRTLGTKPNEVASAIAKFPHILSNSVEEKLCPLLAFFQTLGIPEKQIGKMILLNPRLISYSIETKLTEIVNFLVNLGLSKDGMIGKVIVRDPYIMGYSVDKRLRPTSDFLKSIGLSEADLQAVAVNFPGILSRDVNKLLVPNYAYLKKRGFEERQIVALVVGFPPILIKSIQNSLEPRIKFLVDVMGRQVDEVIDYPCFFRHGLKRRIEPRYKLLKERSLNCSLSEMLDCNRKKFFMKFGLLEGHALSN* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1089 335 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF6, CHLOROPLASTIC/MITOCHONDRIAL 11 328 - -
Gso13g1089 335 SMART mt_12 243 275 IPR003690 GO:0003690|GO:0006355
Gso13g1089 335 SMART mt_12 134 165 IPR003690 GO:0003690|GO:0006355
Gso13g1089 335 SMART mt_12 171 202 IPR003690 GO:0003690|GO:0006355
Gso13g1089 335 SMART mt_12 98 129 IPR003690 GO:0003690|GO:0006355
Gso13g1089 335 SMART mt_12 62 93 IPR003690 GO:0003690|GO:0006355
Gso13g1089 335 SMART mt_12 207 238 IPR003690 GO:0003690|GO:0006355
Gso13g1089 335 SMART mt_12 27 57 IPR003690 GO:0003690|GO:0006355
Gso13g1089 335 SMART mt_12 276 307 IPR003690 GO:0003690|GO:0006355
Gso13g1089 335 PANTHER CGI-12 PROTEIN-RELATED 11 328 IPR003690 GO:0003690|GO:0006355
Gso13g1089 335 Pfam mTERF 170 321 IPR003690 GO:0003690|GO:0006355
Gso13g1089 335 Pfam mTERF 10 167 IPR003690 GO:0003690|GO:0006355
Gso13g1089 335 Gene3D Transcription termination factor 3, mitochondrial 103 329 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1089 Gso-Chr13 25409964 25411847 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Gso13g1089 mTERF 1.9e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1089 K15032 - gmx:100793256 664.455