Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1085 ATGGTTTCTGATAGATCAAAATCTGTGAGATTCCAAGATGAAGCTGAGACAAATAAGTTAATGTACAACAAAGAAAGTCACTTGCCAATGGTGTCCTTTGATGAAGTGAGCGATAAACAGAAGGGTGGGAAGGATGCAATAGGCAAGTCCTCTGATGGAAGAGAACTTTCAAGGGTCTTTTCTGAGGATTATGATGCAGCAGAGATTTTGGTATTGGATCCTAGGGGACATAGAGTAAATACATGGAACAAAATCTTCTTAGCAGCTTGTTTGCTTTCGTTATTTGTGGATCCCCTATTCTTTTACTTACCAGTGGCTAAGAAAGACAAGTGCATTGATATGTCAACTGGTCTTGAAGTGTTCCTCACCATAATCCGGTCATTGATTGATGCATTTTACATTATTCAGATTTATTTTCGGTTTCAAACTGCTTATATTGCTCCTTCCTCTCGTGTTTCTGGTAGAGGAGAGCTTATCATAGACTCTTCAAAAATTGCATCAAAGTACATGCGAAGAGATTTCTGGCTTGATGTAATGGCTGCTCAACCACTTCCACAGGTATTGATTTGGGCAGTAATTCCATATCTAAAAGGGTCTCAAATGATTGCTTCAAGGCATGTTTTACGCCTTGTTTCCATTTTCCAGTACCTCTTGAGGTTGTATCTTATTTATCCTCTATCATCTGAAATCGTCAAGGCAAATGGGGTAATGATGGAAAAAGCATGGGCTGGGGCAGCATACAATCTGATGCTTTATATGCTAGCTAGTCATGTTTTAGGATCCTCTTGGTACCTGTTATCAATTGAACGCCAAAATGAATGTTGGAAGAAAGCTTGTACACTGCAGTACCCACACTGCCAGTATCGTTATCTTGATTGTCAAAGCATGGGTGACCCAGATAGGATTGTTTGGTTAAGATCAAGCAATCTCTCACGTCTATGTGATCAGAACAGTGATTTCTTTCAATTTGGCATTTTTGTTGATGCTCTCAATTTGGAAGTTACAGCTTCACAATTCTTCAACAAATACTGCTACTGTCTATGGTGGGGACTAAGGAATCTAAGCTCTGTGGGACAGAATCTCTTAACAGGTACACGTGTTGCGGAGATCAATTTTGCCATGATTATTGCAGTTCTTGGATTGGTGCTTTTTGCATTGCTTATAGGCAATATGCAAACCTACCTGCAATCCACCACTACACGGCTAGAAGAATGGAGAATACGAAGGACAGATACAGAAAGATGGATGCATCACAGGCAGCTCCCCCGTTACCTGAAGCAAAACGTACGACGTCATGAACAATTCAGATGGGTTGCTACTAGGGGAGTTGATGAGGAAACTATTCTCAGAGACCTTCCCATAGATCTAAGACGTGACATCAAACGCCACCTTTGCCTCAATCTAGTCCGACAAGTACCACTATTTGATCACATGGATGAAAGGATGCTAGATGCAATATGTGAAAGGCTGAAACCTTCTCTTTTCACTCCAGGCGCTTGTGTGGTTCGCGAAGGTGACCTTGTGAATGAGATGCTTTTCATTGTTCGAGGACGCCTAGATTCTTGCACCACCAATGGTGGCAGAACAGGTTTCTTCAACACCTGCAGACTTGGCTCCGGTGACTTCTGTGGTGAAGAGCTCTTGCCATGGACCTTGGACCCTCGTCCAACGGTTGTCCTTCCTTCGTCAACTCGCACGGTGAAATCCATCACTGAAGTGGAAGCCTTTGCACTCATTGCAGGGGACTTGAAGTTTGTGGCTGCACAATTCAGAAGGCTGCACAGCAAACAACTAAGGCACACTTTTAGGTTCCACTCCCATCAGTGGAGGACTTGGGCTGCATGCTTCATACAAGCAGCATGGTTCAGGTATAAGAGAACAAAGGAGACAAGTGAGCTCAAGAAAAAGGAGAATCTGATGATGGCCTTTGTTCTTGGAACCGGCAGTGAACATTTCTCTGCACCTCTGCAGTCCCCAAAGGGCACAATGTATGCTGCAAAACTAGCATCCAGCCCAAGGAAAGGTAGGAGCTTGAGATATGGGCCTGAACTTGACATTCTTGGTTCATTGAGGAAGCCCCTTGAACCAGACTTTACTGATGATGATGACAGTTGA 2115 0.4326 MVSDRSKSVRFQDEAETNKLMYNKESHLPMVSFDEVSDKQKGGKDAIGKSSDGRELSRVFSEDYDAAEILVLDPRGHRVNTWNKIFLAACLLSLFVDPLFFYLPVAKKDKCIDMSTGLEVFLTIIRSLIDAFYIIQIYFRFQTAYIAPSSRVSGRGELIIDSSKIASKYMRRDFWLDVMAAQPLPQVLIWAVIPYLKGSQMIASRHVLRLVSIFQYLLRLYLIYPLSSEIVKANGVMMEKAWAGAAYNLMLYMLASHVLGSSWYLLSIERQNECWKKACTLQYPHCQYRYLDCQSMGDPDRIVWLRSSNLSRLCDQNSDFFQFGIFVDALNLEVTASQFFNKYCYCLWWGLRNLSSVGQNLLTGTRVAEINFAMIIAVLGLVLFALLIGNMQTYLQSTTTRLEEWRIRRTDTERWMHHRQLPRYLKQNVRRHEQFRWVATRGVDEETILRDLPIDLRRDIKRHLCLNLVRQVPLFDHMDERMLDAICERLKPSLFTPGACVVREGDLVNEMLFIVRGRLDSCTTNGGRTGFFNTCRLGSGDFCGEELLPWTLDPRPTVVLPSSTRTVKSITEVEAFALIAGDLKFVAAQFRRLHSKQLRHTFRFHSHQWRTWAACFIQAAWFRYKRTKETSELKKKENLMMAFVLGTGSEHFSAPLQSPKGTMYAAKLASSPRKGRSLRYGPELDILGSLRKPLEPDFTDDDDS* 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1085 704 Gene3D Jelly Rolls 472 592 IPR014710 -
Gso13g1085 704 Pfam Ion transport protein 81 401 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gso13g1085 704 Gene3D Helix hairpin bin 400 465 - -
Gso13g1085 704 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 8 700 - -
Gso13g1085 704 CDD CAP_ED 474 605 IPR000595 -
Gso13g1085 704 SMART cnmp_10 474 605 IPR000595 -
Gso13g1085 704 SUPERFAMILY cAMP-binding domain-like 403 594 IPR018490 -
Gso13g1085 704 SUPERFAMILY Voltage-gated potassium channels 73 396 - -
Gso13g1085 704 Gene3D - 86 398 - -
Gso13g1085 704 PANTHER PROTEIN CNGC15A 8 700 - -
Gso13g1085 704 ProSiteProfiles cAMP/cGMP binding motif profile. 474 559 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1085 Gso-Chr13 25377072 25385530 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1085 48 701 Ion Channels AT2G28260 62.997 0.0 858
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1085 K05391 - gmx:100804375 1425.61