Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1081 ATGATTACATTCATGGACACAAAAGAGAAATTAAAGGAGGTGGAGAGGTGTTTGGATCCTCAGCTATGGCATGCGTGTGCAGGTGGTATGGTACAAATGCCAACAGTGAACACTAAGGTCTATTACTTCCCTCAAGGTCATGCTGAGCATGCATGTGGACCAGTTAACTTCAAGACTTGTCCTAAGGTTCCACCTTTTGTTCCATGTAGAGTGGTTGCTGTCAAATACATGGCTGATCCTGAGACAGATGAGGTCTATGCCAAACTCAAGCTCGTTCCTCTGAATGCCAATGATGTTGATTATGACCATGATGTTATTGGGGCTGAAACTCGAGACAAGCCAGCTTCATTTGCAAAAACCTTGACCCAATCTGATGCTAACAATGGTGGGGGATTTTCTGTTCCTAGGTATTGTGCTGAGACAATTTTCCCTCGTTTGGACTACTCAGCTGACCCTCCCGTTCAAAACATCCTTGCCAAGGATGTTCATGGGGAAACATGGAAATTCAGACACATCTATAGGGGCACGCCAAGGCGACATTTGTTGACCACTGGGTGGAGTACTTTTGTGAATCACAAGAAGCTTGTTGCTGGGGACTCAATTGTGTTTTTGAGGGCAGAAAATGGGGATTTGTGTGTTGGTATTCGGCGAGCAAAGAAGGGGATTGGCGGTGGACTTGAGACTTCCTCAGGGTGGAATCCTGCAGGAGGAAATTTTCCTATGCCTTATAGTGGATTTTCTCCCTTTTTGAGGGAGGATGATAATAGAATCTTGAGAAATGGCAATAGCAATGGATTGAACCCTAGTGTAAGTATGATGGGAAAGGGAAAAGTGAGGCCAGAAGCAATTATTGAAGCTGCAAATCTTGCAGCCAATAAGAAACCCTTTGAGGTTGTTTACTACCCTCGGGCAAGTACTCCCGAGTTTTGTGTGAAGGCCTCACTAGTTGAAGCAGCAATGCAGACTAGGTGGTATTCTGGAATAAGGTTCAAGATGGCCTTTGAAACGGAAGACTCCTCGCGAATAAGTTGGTTTATGGGAACTATATCTTCGGTTCAGGTTGCTGATCCCCTAAACTGGCCTAACTCACCATGGAGGCTTCTCCAGGTTACATGGGATGAACCAGATTTACTTCAAAATGTGAGAAGGGTGAGCCCGTGGCTGGTTGAATTGGTGTCAAACATGCCTGCCATTCATTTTTCCCCTTTCTCACCACCACGGAAGAAATTGAGATTGCCTCAGCACCCAGATTTTCCCCTTGATGGCCAGATTCCTTTGCCGACACTTCCCAACAACCTTCTAGGTCCCAACAACACCAACCAATTTGGTTGTCTACTCGAAAGTACTCCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTATGGTCTATCCTTATCGGATCTCCACCTCAGTAAATTGCAATCAGGTCTATCTTCGGCTGGTTTCCCGCCTCTTGATCACGCTGCTACGCCAATGAAGGTCTCAAATAACAAGACATTGCAAAAGCCTAGCATCAGTGAGAACGTCTCTTGCTTACTATCTATGACAAATTCTACTCGGTCTTCAAAGAAATTGGATGCTGGGAAGACACCTTCGCTCATGCTTTTTGGCCAAAAAATTCTCACTGAGCAACAGATCTCTCCGAGCAGCTCTGTTGATACACTCTCCCCAGTTCTTACCAGAAATTGTTCGACAGATGGAAATGTCAATAAAGTGACTAATTTTTTTGATGGTTTTGGATCAGCTCTTCATCAGCAAGGTTTACACGAACACTCCTCTTGTGAGAGGTTCCAGTGGTGTAAGGATAATCACCAAGAAATTGAGGCCAATATGGAGACTGGCCATTGTAAAGTTTTTATGGAGTCCGAAGATGTAGGCCGAACTATGGACCTATCGTTGCTTCGATCTTACGATGAATTACATAGAAAGTTGGCAGACATGTTTGGCATAGAAAAATCTGAAATGTTAAGTCGGGTGCTTTACTGCGATTCAGTTGGGGCTATCAAACACATTGGTGATGAGCCATTCAGTGACTTCACAAGAACAGCCAAAAGGTTGACTATTCTAATGGATTCTGGCAGCAACAATGTAGGAGTGTAG 2100 0.4476 MITFMDTKEKLKEVERCLDPQLWHACAGGMVQMPTVNTKVYYFPQGHAEHACGPVNFKTCPKVPPFVPCRVVAVKYMADPETDEVYAKLKLVPLNANDVDYDHDVIGAETRDKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQNILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKKGIGGGLETSSGWNPAGGNFPMPYSGFSPFLREDDNRILRNGNSNGLNPSVSMMGKGKVRPEAIIEAANLAANKKPFEVVYYPRASTPEFCVKASLVEAAMQTRWYSGIRFKMAFETEDSSRISWFMGTISSVQVADPLNWPNSPWRLLQVTWDEPDLLQNVRRVSPWLVELVSNMPAIHFSPFSPPRKKLRLPQHPDFPLDGQIPLPTLPNNLLGPNNTNQFGCLLESTPAGMQGARHAHYGLSLSDLHLSKLQSGLSSAGFPPLDHAATPMKVSNNKTLQKPSISENVSCLLSMTNSTRSSKKLDAGKTPSLMLFGQKILTEQQISPSSSVDTLSPVLTRNCSTDGNVNKVTNFFDGFGSALHQQGLHEHSSCERFQWCKDNHQEIEANMETGHCKVFMESEDVGRTMDLSLLRSYDELHRKLADMFGIEKSEMLSRVLYCDSVGAIKHIGDEPFSDFTRTAKRLTILMDSGSNNVGV* 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1081 699 Pfam Auxin response factor 286 369 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gso13g1081 699 SUPERFAMILY DNA-binding pseudobarrel domain 109 218 IPR015300 -
Gso13g1081 699 Gene3D - 115 219 IPR015300 -
Gso13g1081 699 ProSiteProfiles B3 DNA-binding domain profile. 117 219 IPR003340 GO:0003677
Gso13g1081 699 CDD B3_DNA 116 217 IPR003340 GO:0003677
Gso13g1081 699 PANTHER AUXIN RESPONSE FACTOR 6 690 - -
Gso13g1081 699 SMART B3_2 117 219 IPR003340 GO:0003677
Gso13g1081 699 Gene3D - 324 397 - -
Gso13g1081 699 ProSiteProfiles PB1 domain profile. 613 693 IPR000270 GO:0005515
Gso13g1081 699 Pfam B3 DNA binding domain 117 218 IPR003340 GO:0003677
Gso13g1081 699 Gene3D - 609 697 - -
Gso13g1081 699 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 690 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1081 Gso-Chr13 25308251 25313371 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1081 14 699 B3 DNA Binding Superfamily AT4G30080 56.958 0.0 740
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gso13g1081 B3 3.7e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1081 - - gmx:100796522 1286.55