Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1078 ATGCCACCGAAGTTCGATCCCTCGCAGGTGGTGGACGTGTTCGTCCGAGTCACCGGCGGCGAGGTCGGCGCGGCGAGTTCTCTCGCCCCGAAGATCGGTCCCTTGGGACTCTCCCCAAAGAAGATCGGAGAGGATATTGCGAAGGAAACCGCGAAGGACTGGAAGGGCCTCCGCGTGACGGTGAAGCTAACCGTGCAGAACCGGCAGGCGAAAGTGACGGTGGTGCCATCCGCCGCCGCGCTGGTCATCAAGGCGCTGAAGGAACCCGAAAGGGACAGGAAGAAGACGAAGAACATCAAGCACAATGGGAACATCTCCCTCGACGACGTGGTTGAGATCGCTAGGGTGATGAGCCCGCGCTCCATGGCGAAGGATCTTAGTGGGACCATCAAGGAGATTCTCGGGACTTGTGTTTCGGTTGGGTGCACCGTGGATGGGAAGGACCCCAAGGATCTGCAGCAGGAAATTTCTGATGGAGATGTTGAGGTTCCTCTTCATTGA 501 0.5848 MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVVEIARVMSPRSMAKDLSGTIKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEVPLH* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1078 166 Pfam Ribosomal protein L11, RNA binding domain 75 144 IPR020783 GO:0003735|GO:0005840|GO:0006412
Gso13g1078 166 Gene3D - 1 81 IPR036796 -
Gso13g1078 166 Gene3D - 82 164 IPR036769 -
Gso13g1078 166 Pfam Ribosomal protein L11, N-terminal domain 15 69 IPR020784 -
Gso13g1078 166 ProSitePatterns Ribosomal protein L11 signature. 131 146 IPR020785 GO:0003735|GO:0005840|GO:0006412
Gso13g1078 166 PANTHER 60S RIBOSOMAL PROTEIN L12-3-LIKE 1 165 - -
Gso13g1078 166 SUPERFAMILY Ribosomal protein L11, C-terminal domain 76 149 IPR036769 -
Gso13g1078 166 SMART rl11c 13 145 IPR000911 GO:0003735|GO:0005840|GO:0006412
Gso13g1078 166 CDD Ribosomal_L11 13 144 IPR000911 GO:0003735|GO:0005840|GO:0006412
Gso13g1078 166 Hamap 50S ribosomal protein L11 [rplK]. 9 146 IPR000911 GO:0003735|GO:0005840|GO:0006412
Gso13g1078 166 PANTHER 60S RIBOSOMAL PROTEIN L12 1 165 IPR000911 GO:0003735|GO:0005840|GO:0006412
Gso13g1078 166 SUPERFAMILY Ribosomal L11/L12e N-terminal domain 1 87 IPR036796 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1078 Gso-Chr13 25274363 25275281 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1078 1 164 Cytoplasmic Ribosomal Protein Gene Family AT2G37190 89.024 9.49e-108 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1078 K02870 - gmx:100789561 327.405