Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1075 ATGGTCTTTCTCATTTTCTCCACACGCTCTCCCTCTCCAAAACCTTCACATATACCCCGAAACACCAACATCCAACGGAGTGTTGTTAGGTTACGCTTATTTCAAGACATGAAGATTCCTTGTTTTTCTTGTTTCTTGCCATCGACCACTGAAGAAAACAACAACAACAACGACTACCCAGATGAAGATGGGAGCTTTCGTTTGTTCACTTACAACCAATTGAAATTAGCCACGTGCAATTTTCATTCCTCGGAGAAGGTTGGAGAAGGAGGCTTTGGATCTGTCTTTAAGGGGAAGCTTGTAGATGGATCTTTTGTGGCGGTGAAAGTGCTTTCGGTTGAGGTGGAATCCATGCGAGGAGAGAGGGAATTTGTGGCGGAATTGGCTACACTTGCAAACATCAAGCACCAAAATCTTGTAAGCCTAAAAGGGTGTTGTGTGGAAGGTGTTCATAGATATTTGGTCTATGATTATATGGAGAACAATAGCCTCTACAACGCTTTCTTAGGTTCGGAGGAGAGAAGGATGAAATTCACTTGGGAAAGAAGGAGGGACATATCCATAGGTGTGGCTCGGGGACTTGACTTTCTTCATGAGCAGCTTAAGCCTCATATCGTACATAGAGACATCAAAGCAAAAAACATACTTCTTGATAGTAATTTCATACCAAAGGTTTCTGATTTTGGTTTGGCAAAATTGCTGAGAGATGAAACATCTCACATTAGCACTCGGGTTGCAGGGACATTGGGTTATCTAGCTCCAGAATATGCAAATTCTGGCCAGGTTTCGCGAAAATCAGATGTTTATAGCTTCGGAGTGTTACTTTTACAAATTGTGAGTGGCCTAGCAGTGGTGGATGCCTATCAAGACATTGAACGTTTCATAGTGGAGAAGGCGTGGACAGCGTATCAAGGTAACGATCTACTAAAGCTGGTGGATCCCATGCTTAATATGAATTTTCCAGAGGAAGAGGCCTTGAAATTCCTCAAGATAGGGCTGCTTTGCGTGCAAGAAACTGCCAAGTTTCGGCCGCCAATGTCAGAGGTTCTAGAGAGATTGACCAAGGACATTGACATGATAGATGTTCACATTTCGAAACCAGGGTTCGTTGCTGATCTTAGGAACATCAGAATCAAACAACAAAACCTTAACTCGTCCCAGGAATCAAGTTCTGCTGGAGCAACCTTTACAAGCTCCATTTGGAGTTCGGTCAATCTTGCTCGTTAA 1227 0.4311 MVFLIFSTRSPSPKPSHIPRNTNIQRSVVRLRLFQDMKIPCFSCFLPSTTEENNNNNDYPDEDGSFRLFTYNQLKLATCNFHSSEKVGEGGFGSVFKGKLVDGSFVAVKVLSVEVESMRGEREFVAELATLANIKHQNLVSLKGCCVEGVHRYLVYDYMENNSLYNAFLGSEERRMKFTWERRRDISIGVARGLDFLHEQLKPHIVHRDIKAKNILLDSNFIPKVSDFGLAKLLRDETSHISTRVAGTLGYLAPEYANSGQVSRKSDVYSFGVLLLQIVSGLAVVDAYQDIERFIVEKAWTAYQGNDLLKLVDPMLNMNFPEEEALKFLKIGLLCVQETAKFRPPMSEVLERLTKDIDMIDVHISKPGFVADLRNIRIKQQNLNSSQESSSAGATFTSSIWSSVNLAR* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1075 408 SUPERFAMILY Protein kinase-like (PK-like) 62 366 IPR011009 -
Gso13g1075 408 CDD STKc_IRAK 87 355 - -
Gso13g1075 408 Gene3D Phosphorylase Kinase; domain 1 47 158 - -
Gso13g1075 408 PANTHER RECEPTOR-LIKE KINASE 41 381 - -
Gso13g1075 408 Gene3D Transferase(Phosphotransferase) domain 1 159 364 - -
Gso13g1075 408 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Gso13g1075 408 Pfam Protein kinase domain 81 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g1075 408 ProSiteProfiles Protein kinase domain profile. 81 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g1075 408 ProSitePatterns Protein kinases ATP-binding region signature. 87 109 IPR017441 GO:0005524
Gso13g1075 408 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 41 381 - -
Gso13g1075 408 SMART serkin_6 81 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1075 Gso-Chr13 25219157 25221522 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1075 69 372 Receptor kinase-like Gene Family AT1G56120 48.852 5.55e-91 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso13g1075 Pkinase 1.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1075 - - gmx:100801728 790.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1508 19 43904197 43906451 Gso13g1075 13 25219157 25221522 PCT
Gso3g1522 3 41093265 41096002 Gso13g1075 13 25219157 25221522 PCT
Gso13g1075 13 25219157 25221522 Gso19g1508 19 43904197 43906451 PCT
Gso13g1075 13 25219157 25221522 Gso3g1522 3 41093265 41096002 PCT