Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso13g1074 | ATGGGTAACATAGGAAGCAGCGGCTCCAACAGCCGCCGGAGACACGGCGGCGGCGGCGGCAGCGGTAGGCGGATTCACCCGCCTCCGCCGCAGGTGATGCCGCCGCCGGAGGTCACGGCCAACCAATTCGTGTATCCTCCGGCCGCCACGCCGTATCACAACTACCCCGGGTACTACCCGGCGCCGACCACCATGCCGGCGCCGTTGCCGGCGCCGTACGACCACCACCACCGTACGGAGGTAGACCCGATGTGGGGGCGGTATCCGGTGGCGGCACCGCCGGCACCGGCGCCGTACGTGGAACACCAGAAGGCGGTTACTATTAAGAACGATGTCAACATCAAGAAGGAGACGCTTAGGATTGAGCCTGATGACGAGAATCCTGGCCGTTTCCTTGTGTCGTTTACGTTTGATGCCACCGTTTCGGGGAGCATCACCATACTTTTCTTTGCAAAAGAAGGGGAAGGTTGCACACTAACTCCAATGAAAGAAAATGTTCTTCCACCCGTGACTGTAAATTTCCAGCAAGGACTTGGCCAGAAGTTTAAACAGCCAGCTGGAACTGGTATTGATTTTTCAACATTTGAGGAGTCTGAGTTATTGAAAGTAGGGGACATGGATGTCTATCCTGTTGCAATTAAAGCAGATGCATCCTCCAGCGACCATGATGAATCAAAATCAAATGAAACTCCATCATCCGGTAGCTCAAACTCTCAGATAACTCAAGCAGTGTTTGAGAAGGAGAAAGGAGAATTCCAGGTGAAGGTTGTGAAGCAGATCTTATGGGTAAATGGAATGAGGTATGAACTGCAGGAGATATATGGTATTGGAAATTCAGTGGAGAGTGATGTGGATGGGAATGACCCAGGAAAAGAGTGTGTTATATGCTTGTCAGAGCCTCGGGACACAACTGTCCTTCCATGCCGCCACATGTGTATGTGTAGCGGATGTGCGAAGGTTTTGAGGTTCCAGACAAATAGATGTCCAATCTGCAGACAACCAGTTGAGAGGCTATTGGAGATCAAAGTCGGGCCTGAGCCTGAGCCTGAGGAATGA | 1056 | 0.5237 | MGNIGSSGSNSRRRHGGGGGSGRRIHPPPPQVMPPPEVTANQFVYPPAATPYHNYPGYYPAPTTMPAPLPAPYDHHHRTEVDPMWGRYPVAAPPAPAPYVEHQKAVTIKNDVNIKKETLRIEPDDENPGRFLVSFTFDATVSGSITILFFAKEGEGCTLTPMKENVLPPVTVNFQQGLGQKFKQPAGTGIDFSTFEESELLKVGDMDVYPVAIKADASSSDHDESKSNETPSSGSSNSQITQAVFEKEKGEFQVKVVKQILWVNGMRYELQEIYGIGNSVESDVDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVGPEPEPEE* | 352 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso13g1074 | 351 | MobiDBLite | consensus disorder prediction | 216 | 239 | - | - | |
Gso13g1074 | 351 | SMART | ring_2 | 293 | 331 | IPR001841 | - | |
Gso13g1074 | 351 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
Gso13g1074 | 351 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE | 1 | 348 | - | - | |
Gso13g1074 | 351 | PANTHER | MAHOGUNIN | 1 | 348 | IPR045194 | GO:0061630 | |
Gso13g1074 | 351 | ProSiteProfiles | Zinc finger RING-type profile. | 293 | 332 | IPR001841 | - | |
Gso13g1074 | 351 | SUPERFAMILY | RING/U-box | 292 | 338 | - | - | |
Gso13g1074 | 351 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 277 | 342 | IPR013083 | - | |
Gso13g1074 | 351 | CDD | mRING-HC-C3HC5_MGRN1_like---blasttree | 292 | 332 | IPR045195 | - | |
Gso13g1074 | 351 | Pfam | Zinc finger, C3HC4 type (RING finger) | 291 | 337 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso13g1074 | Gso-Chr13 | 25200912 | 25205082 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gso13g1074 | 86 | 312 | C3H Transcription Factor Family | AT3G09770 | 66.667 | 6.61e-106 | 312 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso13g1074 | - | - | gmx:100789032 | 633.639 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gso19g1507 | 19 | 43896512 | 43899962 | Gso13g1074 | 13 | 25200912 | 25205082 | PCT | |
Gso3g1521 | 3 | 41084943 | 41088404 | Gso13g1074 | 13 | 25200912 | 25205082 | PCT | |
Gso13g1074 | 13 | 25200912 | 25205082 | Gso19g1507 | 19 | 43896512 | 43899962 | PCT | |
Gso13g1074 | 13 | 25200912 | 25205082 | Gso3g1521 | 3 | 41084943 | 41088404 | PCT |