Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1074 ATGGGTAACATAGGAAGCAGCGGCTCCAACAGCCGCCGGAGACACGGCGGCGGCGGCGGCAGCGGTAGGCGGATTCACCCGCCTCCGCCGCAGGTGATGCCGCCGCCGGAGGTCACGGCCAACCAATTCGTGTATCCTCCGGCCGCCACGCCGTATCACAACTACCCCGGGTACTACCCGGCGCCGACCACCATGCCGGCGCCGTTGCCGGCGCCGTACGACCACCACCACCGTACGGAGGTAGACCCGATGTGGGGGCGGTATCCGGTGGCGGCACCGCCGGCACCGGCGCCGTACGTGGAACACCAGAAGGCGGTTACTATTAAGAACGATGTCAACATCAAGAAGGAGACGCTTAGGATTGAGCCTGATGACGAGAATCCTGGCCGTTTCCTTGTGTCGTTTACGTTTGATGCCACCGTTTCGGGGAGCATCACCATACTTTTCTTTGCAAAAGAAGGGGAAGGTTGCACACTAACTCCAATGAAAGAAAATGTTCTTCCACCCGTGACTGTAAATTTCCAGCAAGGACTTGGCCAGAAGTTTAAACAGCCAGCTGGAACTGGTATTGATTTTTCAACATTTGAGGAGTCTGAGTTATTGAAAGTAGGGGACATGGATGTCTATCCTGTTGCAATTAAAGCAGATGCATCCTCCAGCGACCATGATGAATCAAAATCAAATGAAACTCCATCATCCGGTAGCTCAAACTCTCAGATAACTCAAGCAGTGTTTGAGAAGGAGAAAGGAGAATTCCAGGTGAAGGTTGTGAAGCAGATCTTATGGGTAAATGGAATGAGGTATGAACTGCAGGAGATATATGGTATTGGAAATTCAGTGGAGAGTGATGTGGATGGGAATGACCCAGGAAAAGAGTGTGTTATATGCTTGTCAGAGCCTCGGGACACAACTGTCCTTCCATGCCGCCACATGTGTATGTGTAGCGGATGTGCGAAGGTTTTGAGGTTCCAGACAAATAGATGTCCAATCTGCAGACAACCAGTTGAGAGGCTATTGGAGATCAAAGTCGGGCCTGAGCCTGAGCCTGAGGAATGA 1056 0.5237 MGNIGSSGSNSRRRHGGGGGSGRRIHPPPPQVMPPPEVTANQFVYPPAATPYHNYPGYYPAPTTMPAPLPAPYDHHHRTEVDPMWGRYPVAAPPAPAPYVEHQKAVTIKNDVNIKKETLRIEPDDENPGRFLVSFTFDATVSGSITILFFAKEGEGCTLTPMKENVLPPVTVNFQQGLGQKFKQPAGTGIDFSTFEESELLKVGDMDVYPVAIKADASSSDHDESKSNETPSSGSSNSQITQAVFEKEKGEFQVKVVKQILWVNGMRYELQEIYGIGNSVESDVDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVGPEPEPEE* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1074 351 MobiDBLite consensus disorder prediction 216 239 - -
Gso13g1074 351 SMART ring_2 293 331 IPR001841 -
Gso13g1074 351 MobiDBLite consensus disorder prediction 1 41 - -
Gso13g1074 351 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 348 - -
Gso13g1074 351 PANTHER MAHOGUNIN 1 348 IPR045194 GO:0061630
Gso13g1074 351 ProSiteProfiles Zinc finger RING-type profile. 293 332 IPR001841 -
Gso13g1074 351 SUPERFAMILY RING/U-box 292 338 - -
Gso13g1074 351 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 277 342 IPR013083 -
Gso13g1074 351 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 292 332 IPR045195 -
Gso13g1074 351 Pfam Zinc finger, C3HC4 type (RING finger) 291 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1074 Gso-Chr13 25200912 25205082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1074 86 312 C3H Transcription Factor Family AT3G09770 66.667 6.61e-106 312
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1074 - - gmx:100789032 633.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1507 19 43896512 43899962 Gso13g1074 13 25200912 25205082 PCT
Gso3g1521 3 41084943 41088404 Gso13g1074 13 25200912 25205082 PCT
Gso13g1074 13 25200912 25205082 Gso19g1507 19 43896512 43899962 PCT
Gso13g1074 13 25200912 25205082 Gso3g1521 3 41084943 41088404 PCT