Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1072 ATGGCAACTGAAGCTGCAGGCTCTTCCAAGGACAACAATAACCAAGGCCATGTCACCACTGAAAATAGGGCTGATATCCCAAAACAAAAGGGTCCAGCACCATCTGAAATAACTGAGGAACTCCCAAGAGAACAACATGGGGCAAGGCAAAACCTTATCTTGGATATTCCTGCAATATCTCAGGAGGAAGCAAGAGAAGATTACGTGAGGATAAACATGCCTCTAACTCCGCCTCCAAGAAGAGTGATTTTTTCTCCCTGTCCAAGTCCTGTTTTCCCCAGAAGCAAAGAATCCCCAGGTCCCTCCTCATCAAAAAGTAAATCAAATATTAAAACCTTTCTTCCCAAACTCAGTTTGAAATTTCGTAACACAAGTTCGGAGATTGAAAAGGCTGCCTTCCTAGCACTAGAAGGATCAACAGTGGCACCAAAAAAGCCTTTTCTTTCAAGGACATTATCTCTTGTCACACCTAGAGGGAAGAAAACATCATCCTTACCTGTAACCCCAATTGCTCATTCAAATCCAGGGTCTGTACATGGAGGGAACTTGGTTTATGCAGAAACAGTTGAGAAAGAACTGAACTTACCAATCCATCGTTCCCGTTCAGTACCTGTGCTTAACAAAGAAGGTAACTCACCTGTACGTGGCATGTTTCGCATAGTTCCGACCACACTACGATTGGATGAGAAAATTGCCAGTGCAACGCCTATGACATCTCCAATTCATGATACTGTTAAAAATGAGGATGGTGGTGAAGATATTCCCGAAGAAGAAGCTGTTTGTAGAATTTGTTTTGTTGAACTCGGAGAAGGTGCTGATACTTTCAAATTGGAGTGTAGCTGCAAAGGTGAGCTTTCGTTGGCACACAGAGAATGTGTAGTCAAGTGGTTTACCATTAAAGGTAATAGAACTTGTGACGTGTGCAAGCAAGAAGTTCAGAATCTACCTGTCACTCTTTTACGAGTTCAAAATGGCCAGGCACATAACATGTTAGGGGCTGATGCTTCTCAATACAGGGTGTGGCAGGATGCTCCCATTCTTGTTGTTATCAACATGCTGGCTTACTTTTGTTTTCTTGAGCAGCTTCTTGTGTCTAATATGGGATCTGGTGCTATTGCCATGTCTCTCCCATTTTCATGTATATTGGGTCTTCTTGCAAGCATGACAGCTACAACAATGGTGAGGAGAAATCATGTTTGGATTTATGCAACTGTTCAGTTTTGTCTGGTGGTTCTTGCTGGACATCTTTTTTTCTCATTGGTTCATATGCAAGCTGTTCTAGCTATCCTTCTAGCTACATTTACTGGGTTTGGAGTGGTAATGTGTGGAGCTTCTATTCTTATGGAGATTTTGAAGTGGAGGGGAAGATCACTTGCTCAATCGAATCAACAGCAAGGTTCCCAAGAGGCAATACCACCACCTGATCAATCATCTACAGTTGCTCATCAACCTCAGATTGGTTCTGAACAAACTGAAAGTAATTTGGGAGAGTCTCCTGCACAGAGGAGTTGA 1512 0.4266 MATEAAGSSKDNNNQGHVTTENRADIPKQKGPAPSEITEELPREQHGARQNLILDIPAISQEEAREDYVRINMPLTPPPRRVIFSPCPSPVFPRSKESPGPSSSKSKSNIKTFLPKLSLKFRNTSSEIEKAAFLALEGSTVAPKKPFLSRTLSLVTPRGKKTSSLPVTPIAHSNPGSVHGGNLVYAETVEKELNLPIHRSRSVPVLNKEGNSPVRGMFRIVPTTLRLDEKIASATPMTSPIHDTVKNEDGGEDIPEEEAVCRICFVELGEGADTFKLECSCKGELSLAHRECVVKWFTIKGNRTCDVCKQEVQNLPVTLLRVQNGQAHNMLGADASQYRVWQDAPILVVINMLAYFCFLEQLLVSNMGSGAIAMSLPFSCILGLLASMTATTMVRRNHVWIYATVQFCLVVLAGHLFFSLVHMQAVLAILLATFTGFGVVMCGASILMEILKWRGRSLAQSNQQQGSQEAIPPPDQSSTVAHQPQIGSEQTESNLGESPAQRS* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1072 503 ProSiteProfiles Zinc finger RING-CH-type profile. 253 315 IPR011016 GO:0008270
Gso13g1072 503 SMART ringv_2 260 309 IPR011016 GO:0008270
Gso13g1072 503 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 3 498 - -
Gso13g1072 503 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 247 316 IPR013083 -
Gso13g1072 503 SUPERFAMILY RING/U-box 257 312 - -
Gso13g1072 503 Pfam RING-variant domain 261 308 IPR011016 GO:0008270
Gso13g1072 503 MobiDBLite consensus disorder prediction 1 22 - -
Gso13g1072 503 MobiDBLite consensus disorder prediction 1 54 - -
Gso13g1072 503 CDD RING_CH-C4HC3_MARCH 261 309 - -
Gso13g1072 503 MobiDBLite consensus disorder prediction 86 109 - -
Gso13g1072 503 MobiDBLite consensus disorder prediction 461 503 - -
Gso13g1072 503 PANTHER OS02G0165000 PROTEIN 3 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1072 Gso-Chr13 25183819 25189771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1072 258 333 C3H Transcription Factor Family AT2G37950 37.662 1.35e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1072 - - gmx:100787963 979.933