Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1070 ATGCAAATGATGCCCGGTGACCCCTTTTCCCTATCCACTTCCATCGGAGGCTTCACTCAAGATAAGCAAAACACAAACCCTAACCCTAAACCTAATCCTCCTCCCAAGAAGAAGAGAAACCTTCCGGGAACACCAGATCCAGATGCAGAGGTCATTGCTCTCTCCCCGAAGACCCTCATGGCAACGAACCGATTTATATGCGAAATATGCAACAAAGGGTTCCAGAGAGACCAGAACCTTCAGCTTCACCGAAGGGGTCACAACCTTCCGTGGAAGCTAAGGCAAAGGTCCAACAAAGAGGTAAGGAAGAAGGTTTATATCTGCCCCGAACAAACCTGCGTCCACCACGACCCTGCAAGAGCACTCGGCGACCTCACTGGCATCAAAAAGCACTTCAGCAGAAAGCACGGTGAGAAGAAGTGGAAGTGTGAAAAGTGCTCCAAGAAATACGCAGTCCAATCAGATTGGAAAGCCCACACCAAAACCTGTGGCACTAGAGAATACAAATGCGACTGTGGCACCCTCTTCTCCAGGAAAGACAGCTTCATTACTCATAGAGCATTCTGCGATGCATTGGCTGAAGAGAGTGCTAGGCTCACGTCAGTTACAACAACAAATCTAAATTTCAAGAGTGAAGAGGGTGGTAATAATGTGATGAACTCGCAGCAGCATGGTTTGGGAGGACATGGACTAATTGGAGCACAAAGTCTTCAAAATGTTTCTGGCATTCCACAATTTGGTTCACATGGTTTTCGTTTGGATTTCAATGGAATGGAACAACAAATTAGGCCAAGTTTGTCGCTATGGTTGAACCAGGGGAATCACCAGATGAATAGTAATAATAATAACATTAATAGCAACAACAATAGTGCTTCCGATGCAGGACCCAATTACATGTCATCATCAGGTTTGCCTGAGATTGTGCAAATGGCTCATGCTAATGCTTTGATGGGTTGTTCTTCATCGATGGTGTCTAATTTTGGAGGAGTTCATGCGGGTTCTAATTCGAGCAGTGCAAATCTTTCACTAGGGAAAAGAGGGGAAGCATGTGGAAGTACTGTAGTGGACTTGGCTTCTATTTATAATAACTCTGAGGGTCAAAACAAGAATTCAAAGCCTGCTTCACCCATGTCAGCAACTGCGCTTCTTCAGAAAGCAGCGCAAATGGGTTCCACCAGAAGCACCAACCCTTCTATTTTCAGTGGTAGTTTTGGAGTGATTAACTCACCTTCCTCACAAACTACCAGTCTCAACAACAACAACAACAACGGAGGTGCAGCCATGATGCTGGCAAGTAACACTTCTACTGCTGCTGCAAATGCAAATGACTTTAGCTCATTGAGGCATTCATCAAACAGTTTTGACCAGCTTGTGATGCAAACCAATGCGCAGTTGCAAAGTGAGCCTGTGAAGTTGAAGCTTCATTCAAATGGTGTGGAGAACAATTTGACAAGGGATTTTCTTGGTGTCAGCGGTGGAGGAGGAGGTGGTGGTGGACCTCAGTTTCTTCCCCAAGAACTTGCAAAGTTTGCTTCCATGGGCTCACCAATGGGGTTGAGCCAATTCACAAGTAACCAATGA 1581 0.4554 MQMMPGDPFSLSTSIGGFTQDKQNTNPNPKPNPPPKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVRKKVYICPEQTCVHHDPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARLTSVTTTNLNFKSEEGGNNVMNSQQHGLGGHGLIGAQSLQNVSGIPQFGSHGFRLDFNGMEQQIRPSLSLWLNQGNHQMNSNNNNINSNNNSASDAGPNYMSSSGLPEIVQMAHANALMGCSSSMVSNFGGVHAGSNSSSANLSLGKRGEACGSTVVDLASIYNNSEGQNKNSKPASPMSATALLQKAAQMGSTRSTNPSIFSGSFGVINSPSSQTTSLNNNNNNGGAAMMLASNTSTAAANANDFSSLRHSSNSFDQLVMQTNAQLQSEPVKLKLHSNGVENNLTRDFLGVSGGGGGGGGPQFLPQELAKFASMGSPMGLSQFTSNQ* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1070 526 SUPERFAMILY beta-beta-alpha zinc fingers 64 161 IPR036236 -
Gso13g1070 526 ProSitePatterns Zinc finger C2H2 type domain signature. 67 87 IPR013087 -
Gso13g1070 526 Gene3D Classic Zinc Finger 120 198 - -
Gso13g1070 526 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 7 514 - -
Gso13g1070 526 MobiDBLite consensus disorder prediction 1 26 - -
Gso13g1070 526 Gene3D Classic Zinc Finger 43 117 - -
Gso13g1070 526 ProSiteProfiles Zinc finger C2H2 type domain profile. 65 87 IPR013087 -
Gso13g1070 526 PANTHER ZINC FINGER PROTEIN JACKDAW 7 514 IPR033243 GO:0003700
Gso13g1070 526 Pfam Zinc-finger double-stranded RNA-binding 65 87 IPR022755 -
Gso13g1070 526 MobiDBLite consensus disorder prediction 1 49 - -
Gso13g1070 526 SMART c2h2final6 65 87 IPR013087 -
Gso13g1070 526 SMART c2h2final6 106 136 IPR013087 -
Gso13g1070 526 SMART c2h2final6 141 161 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1070 Gso-Chr13 25159315 25162355 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1070 1 261 IDZ Gene Family AT5G03150 64.236 1.48e-122 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso13g1070 zf-C2H2_jaz 7.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1070 K25870 - gmx:100801182 921.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1500 19 43835259 43838031 Gso13g1070 13 25159315 25162355 PCT
Gso3g1514 3 41034717 41037649 Gso13g1070 13 25159315 25162355 PCT
Gso13g1070 13 25159315 25162355 Gso19g1500 19 43835259 43838031 PCT
Gso13g1070 13 25159315 25162355 Gso3g1514 3 41034717 41037649 PCT