Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1069 ATGAGCGTCATCGACATTCTAACCCGAGTCGATTCCATTTGCAAGAAGTACGACAAATACGACGTCGAAAAGCACCGCGATGCCAATGTCTCCGGCGACGATGCCTTTGCCAGACTATACGCCTCCGTCGACGCCGACATCGTGGCCTTGCTTCAGAAAGCAGAAAGTGCTTCTAAGGAGAAAGGTAAGGCATCTGCTGTTGCGATCAACGCGGAGATTCGTCGTACTAAGGCTCGGTTGCTGGAGGAGGTTCCCAAGTTGCAGAGATTGGCTGTGAAAAAGGTAAAAGGGCTTTCGTCACAAGAGTTTGCTGCCCGTAATGATTTGGTTCTTGCATTGCCAGATAGAATCCAAGCAATCCCAGATGGGGCTCCTCCTGTGCCAAAACAAACTGGAGGCTGGGCAGCTTCTGCCTCCCGTCCTGAAATTAAGTTTGATTCAGATGGGCGATTTGATGATGAATACTTCCAACAAAGTGAACAATCAAGTCAATTTAGGCAGGAATATGAAATGCGTAGAATGAAACAGGACCAAGGATTGGATGTGATTGCTGAAGGATTGGATACATTGAAAAATATGGCACATGATATGAATGAGGAACTGGATAGACAAGTTCCACTTATGGATGAGATTGACACTAAGGTGGACAAGGCATCCTCTGACCTTAAGAATACAAATGTTAGACTTAAAGACACTGTGAACCAGCTTCGATCCAGTCGAAACTTCTGTATTGATATTGTTTTGTTGATTATAATTTTGGGAATTGCTGCCTACTTATACAACGTACTAAAGAAATGA 798 0.4449 MSVIDILTRVDSICKKYDKYDVEKHRDANVSGDDAFARLYASVDADIVALLQKAESASKEKGKASAVAINAEIRRTKARLLEEVPKLQRLAVKKVKGLSSQEFAARNDLVLALPDRIQAIPDGAPPVPKQTGGWAASASRPEIKFDSDGRFDDEYFQQSEQSSQFRQEYEMRRMKQDQGLDVIAEGLDTLKNMAHDMNEELDRQVPLMDEIDTKVDKASSDLKNTNVRLKDTVNQLRSSRNFCIDIVLLIIILGIAAYLYNVLKK* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1069 265 PANTHER SYNTAXIN 1 261 IPR045242 -
Gso13g1069 265 SMART tSNARE_6 165 232 IPR000727 -
Gso13g1069 265 SUPERFAMILY SNARE fusion complex 165 230 - -
Gso13g1069 265 CDD SNARE_Qc 175 230 - -
Gso13g1069 265 PANTHER SYNTAXIN-73 1 261 - -
Gso13g1069 265 ProSitePatterns Syntaxin / epimorphin family signature. 176 215 IPR006012 GO:0005484|GO:0006886|GO:0016020
Gso13g1069 265 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 170 232 IPR000727 -
Gso13g1069 265 Gene3D - 170 231 - -
Gso13g1069 265 Pfam SNARE domain 207 256 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1069 Gso-Chr13 25137852 25141635 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1069 1 264 SNARE and Associated Proteins AT3G09740 78.195 7.70e-156 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1069 K08506 - gmx:100786529 482.641