Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1068 ATGGGGCATAGACATTTATATAGCTCATCTCCAATGTTTGAGGGTGAACCTGACCAGAACTGGAATCATATGCATATGGATCAACAATATGTGAACCTTGGTAGGAGTAGCACTTCAGACAATGGTTCTTTTATTTATCCTTCGGAAAATATGTCCATAGATAACATTTCTTTTCCATCTCATTGGAACACTGCACCAAGGTCAAACGGATATGCATCCACAAGTCTCAACATTGAAGCACCGCCTCATCAAACAGATGTATCAGGCACTTCTCATGATCATTTTTTGCCTTCACCAAGTGCTGGAATGTTTTATGCGATGCCTGAAAATTATGTACACCAGCCTTCTAATTCTAATTATGACAGACAAGCATTTTCTGCTGCTGATGGGGTTTTTAATGATCTTACAATGGGAAATGGACGAGGGCCTCAAAAGCGAAAGAGCCCTGGAATTCCTCCTGTCTGTGAAAGAGGCAGTACAAGCAGATATTTCAATGCTGCAAGTGCAGCTGATCGTCCTACATCTTCAGAATTGTGGCCAGAGAAGCCCAATATGGATTCTCTATATATGCCTTGGGATCATGTTAATATGACACCCACATTTAGAGGTAGAGGCCTTTCTATACGGGGCGAGGGTCCTTTAAGGAATGTGAGGAGCCGTTCTGCACTTGATTTGGAATCCAACCTGGCTAGGGCCCATTTATCAAATACTCATCCACACAACTCATACTCTACTGGTCTACCAGTTGACCATTCTTCTAGCGTGGTCGATCTGTCAACTCAAACTTCTGGCACTTTGACACGGGATTGGAGCCCAATGAGTTCATGTCCTCCTCATGGAAGGGTGTCATCATCAGATGCAAATGCTTTTAATCACGAGGCAAGTCATTTCCTTAATGGAAGTGGTTCTAGTAATGCTCCTGTAGATGTTGGAGGTTTTCATAATGAATTTGGAACTAGCAGAAATCCTACTGCTCCTCAAAGTTTTCGTAATAATCTGACTCAAACTGCAAGAGGAGTTCGCAGTAACTACTCTCAAAGATCCACTCCAACTTTTAGGGCTTCTTCAAGCTTGCATTTGGGACGTGTGATACCTTCTGATGATGGATTGCATATGGTGGCTGAAAGTTACTCTTCTAGACATCCAAGGCCATTGACCACTGTTGGCTGGCAGAGCAATGATAGACATGGAAGGTCAAGAATACCTAGTGATAGATATCGATCATTGGCTGATGAGGGTTTCATGATTGTTGATCGCACTTCACTGAATGGATCTAGGAATATGCTTGATCAGCATAGAGACATGAGGATGGACATAGACAACATGAGTTATGAGGAACTACTTGCACTTGGAGAGAGAATAGGCCATGTGAGCACAGGATTGTCTGAGGATTTGATTTCCAAGTATTTGACAGAAACAATATACTGTTCATCTGAGCAAAGTCAAGAAGAAGAAACTTGTGCAATCTGTCTGGAAGAATACAAGAACATGGACGATGTTGGGACGCTGAAAGCTTGTGGACATGATTACCATGTGGGTTGCATAAGAAAGTGGTTGTCTATGAAGAAAGTTTGTCCTATCTGCAAAGTTTCTGCGTTGTCAGAGGCTAACAAGGACAAATAA 1623 0.4227 MGHRHLYSSSPMFEGEPDQNWNHMHMDQQYVNLGRSSTSDNGSFIYPSENMSIDNISFPSHWNTAPRSNGYASTSLNIEAPPHQTDVSGTSHDHFLPSPSAGMFYAMPENYVHQPSNSNYDRQAFSAADGVFNDLTMGNGRGPQKRKSPGIPPVCERGSTSRYFNAASAADRPTSSELWPEKPNMDSLYMPWDHVNMTPTFRGRGLSIRGEGPLRNVRSRSALDLESNLARAHLSNTHPHNSYSTGLPVDHSSSVVDLSTQTSGTLTRDWSPMSSCPPHGRVSSSDANAFNHEASHFLNGSGSSNAPVDVGGFHNEFGTSRNPTAPQSFRNNLTQTARGVRSNYSQRSTPTFRASSSLHLGRVIPSDDGLHMVAESYSSRHPRPLTTVGWQSNDRHGRSRIPSDRYRSLADEGFMIVDRTSLNGSRNMLDQHRDMRMDIDNMSYEELLALGERIGHVSTGLSEDLISKYLTETIYCSSEQSQEEETCAICLEEYKNMDDVGTLKACGHDYHVGCIRKWLSMKKVCPICKVSALSEANKDK* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1068 540 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 452 533 IPR013083 -
Gso13g1068 540 SUPERFAMILY RING/U-box 475 532 - -
Gso13g1068 540 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 536 IPR045191 GO:0061630
Gso13g1068 540 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 536 - -
Gso13g1068 540 Pfam Ring finger domain 486 529 IPR001841 -
Gso13g1068 540 MobiDBLite consensus disorder prediction 262 283 - -
Gso13g1068 540 MobiDBLite consensus disorder prediction 138 158 - -
Gso13g1068 540 SMART ring_2 487 528 IPR001841 -
Gso13g1068 540 ProSiteProfiles Zinc finger RING-type profile. 487 529 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1068 Gso-Chr13 25118898 25127595 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1068 1 539 C3H Transcription Factor Family AT2G37150 42.086 5.21e-107 329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1068 - - gmx:100786013 1104.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1497 19 43794334 43802954 Gso13g1068 13 25118898 25127595 PCT
Gso3g1512 3 40998502 41007347 Gso13g1068 13 25118898 25127595 PCT
Gso13g1068 13 25118898 25127595 Gso19g1497 19 43794334 43802954 PCT
Gso13g1068 13 25118898 25127595 Gso3g1512 3 40998502 41007347 PCT