Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1057 ATGGGGAGGAGAGGAAGTAGTTGGTTTTCTACTGTGAAGAAAGCTCTAAGCCCTGAGCCAAAGGAGAAGAACGATCAGAATTCAAGTAGATCAAAGAAGAAATGGTTTGGGAAGCAAAAATTGCAGACTTCAGAATCAACCTCACAAACGGATAATGCACCACCTCTTCCTCCACCTGAGATTATTTTAACTCATGTTGAGAGTGAAATCAGCCATGAGCGTATTGAAGTTGCAACTGCAGTGGATGCTGTGGAACCTGTTCCTGCTGTTCAGATGGCAGCTGCTGAAGTTCAAGCCACCACAACTGTTCAGTTTAACAGTAAACCAACAGAAGAAGTGGCTGCAATCAGGATTCAAAAAGCTTTTCGGGGATACTTGGCAAGAAGAGAATTGCGCGCGTTAAGGGGGCTGGTCAGGTTGAGATCGCTGATGGAAGGGCCAGTGGTGAAACGTCAAGCCATTAGTACTCTCCGTTCTATGCAGACTTTTGCTCATTTGCAAACTCAGATTCGTTCTAGGAGGCTCAGGATGTTAGAGGAGAATCAAGAACTACAGAAACAGCTCTTACAGAAGCACGCAAAAGAGCTAGAGAGCATGCGGCTTGGGGAGGAATGGGATGACAGCATACAATCAAAAGAACAAGTTGAAGCCAAGTTACTGAGCAAGTATGAAGCTGCTATGAGAAGAGAAAGAGCAATGGCTTATTCATTCTCTCATCAGCAAAACTGGAAGAATGCATCAAGATCTGTAAACCCAATGTTCATGGATCAAACCAATCCAGCCTGGGGTTGGAGTTGGTTGGAACGATGGATGGCAGCCCGGCCCTGGGAGAGCCATAGCCTGATGGAGAAAGAGAAGAATGACAATAAATCTCTAAGAAGTTCTAGCCGTGGCATTACCAGTGCTGAAATCAGCAAATCATTTGCTAAGTTTCAGCTCAATTCTGAGAAGCATTCTCCAACAGCCAGCCAAAATCCAGGCTCACCTAACTTTGAGTCCCATTCAAATCCTCCCAAGCCATCTTCTCCTGCAGTTGCTAGGAAACTGAAGAAAGCAAGTCCTAAGGACATCTTGGCTATAGACGATGGCACTAAGAGCATGGTTAGTGTGCAGTCAGAGCGGCCACGGAGGCACTCCATTGCTGGATCAATAGTGGGAGATGATGAAAGCCTTGCAAGCTCTCCATCTATTCCAAGTTACATGGTGCCAACTAAATCTGCAAAAGCTAAGTCCAGGATGCAAAGTCCATTTGCTGCAGAAAACGGAACCCCAGATAAAGGGTCCTCTGGGACTGCAAAGAAACGTCTTTCTTTCCCAGCTTCGCCTGCTAGGCCAAGGAGGCACTCAGGTCCACCAAAGGTAGAGAGCAGCTTCAATGCTGAAATCACTGTGGGAAATGGTGTGGCTGGTTGA 1413 0.4636 MGRRGSSWFSTVKKALSPEPKEKNDQNSSRSKKKWFGKQKLQTSESTSQTDNAPPLPPPEIILTHVESEISHERIEVATAVDAVEPVPAVQMAAAEVQATTTVQFNSKPTEEVAAIRIQKAFRGYLARRELRALRGLVRLRSLMEGPVVKRQAISTLRSMQTFAHLQTQIRSRRLRMLEENQELQKQLLQKHAKELESMRLGEEWDDSIQSKEQVEAKLLSKYEAAMRRERAMAYSFSHQQNWKNASRSVNPMFMDQTNPAWGWSWLERWMAARPWESHSLMEKEKNDNKSLRSSSRGITSAEISKSFAKFQLNSEKHSPTASQNPGSPNFESHSNPPKPSSPAVARKLKKASPKDILAIDDGTKSMVSVQSERPRRHSIAGSIVGDDESLASSPSIPSYMVPTKSAKAKSRMQSPFAAENGTPDKGSSGTAKKRLSFPASPARPRRHSGPPKVESSFNAEITVGNGVAG* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1057 470 MobiDBLite consensus disorder prediction 16 32 - -
Gso13g1057 470 MobiDBLite consensus disorder prediction 408 430 - -
Gso13g1057 470 ProSiteProfiles IQ motif profile. 111 139 IPR000048 GO:0005515
Gso13g1057 470 MobiDBLite consensus disorder prediction 1 60 - -
Gso13g1057 470 SMART iq_5 110 132 IPR000048 GO:0005515
Gso13g1057 470 MobiDBLite consensus disorder prediction 313 340 - -
Gso13g1057 470 Gene3D iswi atpase 108 135 - -
Gso13g1057 470 PANTHER IQ-DOMAIN 5-RELATED 5 466 - -
Gso13g1057 470 Pfam Protein of unknown function (DUF4005) 386 447 IPR025064 -
Gso13g1057 470 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 5 466 - -
Gso13g1057 470 Coils Coil 175 199 - -
Gso13g1057 470 Pfam IQ calmodulin-binding motif 114 132 IPR000048 GO:0005515
Gso13g1057 470 MobiDBLite consensus disorder prediction 313 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1057 Gso-Chr13 25031025 25034911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1057 1 469 IQD Protein Family AT5G03040 51.738 2.44e-138 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1057 - - gmx:100799058 847.04