Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1050 ATGGAGAATAGGGTACCCTTCTTCTTCTTCTTCTTGTTCTCTTTCTCACTCCTGCTGCTACTTCTCTTGGAACTTTCTTCTGCTCAGATGCCAGGTTTTGTAAGTTTGGATTGTGGTGGTAAAGAAAATTTTACAGATGAAATTGGTCTTAATTGGACTCCCGACAAACTTAGGTATGGAGAAATAAGCAATATATCTGTTGCCAATGAGACACGGAAGCAATACACAGCACTACGACATTTTCCTGCTGATTCCAGAAAATACTGCTACACACTTGATGTTGTTAGTAGGACAAGGTACCTACTGAGAGCGTCATTCTTGTACGGGAACTTTGATGCAAACAATGTTTATCCAAAATTTGACATTTTTATTGGTGCTACTCATTGGTCGACTATAGTTATATCTGATGCTAACACTATAGAAATGAGAGAGCTTATATTTTTGGCTTTAAGTCCTACAGTCAGTGTATGTTTATCAAATGCAACAACTGGGAAGCCATTCATATCTACGCTTGAACTCCGGCAATTCAATGGTTCAGTTTATTATACGTACACTGAGGAACACTTTTACCTCAGTGTCTCTGCAAGGATAAATTTTGGTGCAGATAGTGATGCCCCAATCAGGTATCCTGATGACCCATTTGATAGAATTTGGGAGTCAGATTCTGTCAAGAAAGCAAATTATCTTGTTGATGTTGCTGCCGGAACTAGGAAAATTTCCACAAACAAATCAATTGATGTTAACAGTGATGAAATGCCACCGATGAAAGTAATGCAGACTGCTGTGGTGGGCACAAACGGATCTCTAACTTACCGTTTGAATTTGGATGGTTTTCCTGGTTTTGCATGGGCATTTACCTATTTTGCAGAAATTGAAGATTTGGCTGAAAATGAATCCAGAAAATTCAGGCTAGTACTTCCCGGTCATTCAGATATTAGCAAGGCTGTGGTAAATATTGAAGAAAATGCTCCAGGAAAATATCGCCTTTACGAACCAGGATATACCAATTTATCCCTACCCTTTGTTTTGTCCTTTAGATTTGGCAAAACATCTGATTCTTCTAGGGGCCCTCTTCTAAATGCCATGGAGATTAATGAGTATTTGGAGAAAAATGATGGCTCTCCTGATGGAGAAGTGATATCTAGTGTACTTTCACACTACTTCTCAGCTGATTGGGCACAAGAAGGGGGTGACCCGTGTCTACCTGTTCCATGGTCATGGGTCCGCTGTAGCTCAGATCAACAGCCAAAAATAATTTCAATTTTGTTGTCTAGTAAAAACTTGACCGGCAATATTCCTTTGGACATAACGAAATTGACTGGTTTGGTTGAACTACGGCTTGATGGTAATATGTTGACTGGCCCAATACCAGATTTCACGGGATGCATGGACTTAAAGATCATTCATCTTGAGAACAATCAGTTGACAGGTGCACTCCCAACCTCTTTGGCGAACCTTCCAAATTTGAGGGAACTGTATGTCCAAAATAATATGTTATCCGGAACTGTACCTTCGGATCTTCTGAGTAAAGATTTGAATTTGAACTACACTGGAAACACTAATCTTCATAAAGGTAGCGGAAAAAAGAGTCACTTGTATGTGATTATTGGTTCAGCAGTTGGGGCTGCTGTTCTACTTGTGGCCACTATTATATCGTGCTTGGTTATGCGTAAAGGAAAGACAAAATATTACGAACAAAACAGCCTTGTTTCTCACCCTTCTCAGAGTATGGATTCTTCTAAGAGCATTGGTCCTTCTGAAGTGGCACACTGCTTCAGCTTTTCTGAAATTGAAAATTCTACAAATAATTTTGAGAAAAAAATTGGTTCCGGAGGTTTTGGAGTTGTTTACTATGGGAAACTGAAAGATGGAAAAGAGATAGCAGTTAAAGTTCTAACCAGCAATTCCTATCAGGGAAAACGAGAGTTCTCCAATGAGGTAACTCTTCTCTCAAGAATACATCATAGAAACTTGGTACAGCTTCTCGGGTATTGTCGAGAAGAAGGAAATAGCATGCTTATTTATGAGTTCATGCATAATGGAACTCTCAAGGAACATCTTTATGGCCCATTAACACATGGACGGAGCATCAATTGGATGAAGCGCCTTGAGATTGCAGAAGACTCTGCAAAAGGGATTGAGTATCTTCACACAGGCTGTGTTCCTGCTGTCATCCATCGAGACTTAAAAAGCAGCAACATTCTTCTTGACAAACACATGAGAGCCAAGGTTTCAGATTTTGGTCTCTCAAAACTTGCTGTGGATGGAGCCTCCCATGTGTCAAGCATAGTTCGTGGGACGGTAGGATATTTGGATCCTGAGTACTATATTTCCCAGCAGCTTACTGACAAGAGTGATATTTATAGTTTTGGTGTAATTCTTCTTGAACTCATATCTGGTCAAGAAGCAATATCTAATGACAGCTTTGGTGCTAATTGCCGAAACATAGTCCAGTGGGCAAAATTACACATTGAGAGTGGAGATATACAAGGTATTATTGATCCTGTGCTACAAAACAACTATGACCTACAATCAATGTGGAAAATAGCAGAGAAGGCATTAATGTGTGTTCAACCACATGGACATATGCGACCATCAATTTCAGAAGTTCTGAAGGAGATCCAAGATGCAATTGCTATTGAGAGAGAGGCTGAAGGTAATTCGGATGAGCCAAGAAATTCAGTTCATTCTTCAATCAACATGGGTTCTATGGATTTGGCTGCAACTGAGAACTACCTCTCAATTGATGAATCCATTGCACAGCCTATTGCACGATAG 2778 0.3988 MENRVPFFFFFLFSFSLLLLLLLELSSAQMPGFVSLDCGGKENFTDEIGLNWTPDKLRYGEISNISVANETRKQYTALRHFPADSRKYCYTLDVVSRTRYLLRASFLYGNFDANNVYPKFDIFIGATHWSTIVISDANTIEMRELIFLALSPTVSVCLSNATTGKPFISTLELRQFNGSVYYTYTEEHFYLSVSARINFGADSDAPIRYPDDPFDRIWESDSVKKANYLVDVAAGTRKISTNKSIDVNSDEMPPMKVMQTAVVGTNGSLTYRLNLDGFPGFAWAFTYFAEIEDLAENESRKFRLVLPGHSDISKAVVNIEENAPGKYRLYEPGYTNLSLPFVLSFRFGKTSDSSRGPLLNAMEINEYLEKNDGSPDGEVISSVLSHYFSADWAQEGGDPCLPVPWSWVRCSSDQQPKIISILLSSKNLTGNIPLDITKLTGLVELRLDGNMLTGPIPDFTGCMDLKIIHLENNQLTGALPTSLANLPNLRELYVQNNMLSGTVPSDLLSKDLNLNYTGNTNLHKGSGKKSHLYVIIGSAVGAAVLLVATIISCLVMRKGKTKYYEQNSLVSHPSQSMDSSKSIGPSEVAHCFSFSEIENSTNNFEKKIGSGGFGVVYYGKLKDGKEIAVKVLTSNSYQGKREFSNEVTLLSRIHHRNLVQLLGYCREEGNSMLIYEFMHNGTLKEHLYGPLTHGRSINWMKRLEIAEDSAKGIEYLHTGCVPAVIHRDLKSSNILLDKHMRAKVSDFGLSKLAVDGASHVSSIVRGTVGYLDPEYYISQQLTDKSDIYSFGVILLELISGQEAISNDSFGANCRNIVQWAKLHIESGDIQGIIDPVLQNNYDLQSMWKIAEKALMCVQPHGHMRPSISEVLKEIQDAIAIEREAEGNSDEPRNSVHSSINMGSMDLAATENYLSIDESIAQPIAR* 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1050 925 Pfam Malectin-like domain 36 364 IPR024788 -
Gso13g1050 925 Pfam Leucine rich repeat 441 499 IPR001611 GO:0005515
Gso13g1050 925 SUPERFAMILY L domain-like 403 523 - -
Gso13g1050 925 Pfam Protein tyrosine and serine/threonine kinase 604 804 IPR001245 GO:0004672|GO:0006468
Gso13g1050 925 Gene3D Phosphorylase Kinase; domain 1 575 677 - -
Gso13g1050 925 PANTHER OS07G0107800 PROTEIN-RELATED 16 899 - -
Gso13g1050 925 ProSiteProfiles Protein kinase domain profile. 602 878 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g1050 925 PANTHER TYROSINE KINASE DOMAIN PROTEIN 16 899 - -
Gso13g1050 925 ProSitePatterns Serine/Threonine protein kinases active-site signature. 724 736 IPR008271 GO:0004672|GO:0006468
Gso13g1050 925 ProSitePatterns Protein kinases ATP-binding region signature. 608 630 IPR017441 GO:0005524
Gso13g1050 925 SMART serkin_6 602 878 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso13g1050 925 SUPERFAMILY Protein kinase-like (PK-like) 577 872 IPR011009 -
Gso13g1050 925 Gene3D Transferase(Phosphotransferase) domain 1 678 900 - -
Gso13g1050 925 CDD STKc_IRAK 608 875 - -
Gso13g1050 925 Gene3D Ribonuclease Inhibitor 380 528 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1050 Gso-Chr13 24937945 24945231 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1050 26 712 Receptor kinase-like Gene Family AT2G37050 68.723 0.0 989
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Gso13g1050 Malectin_like 4.2e-76 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1050 - - gmx:100798007 1805.03