Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1047 ATGGCCGCCGCAGCACGCCCTCTCGTCACCGTGCAGGCCCTCGACGGTGACATGGCAACCGATGCCTCCGCCACCGTTCCCATCCCTGACGTCATGAAGGCCTCTATCCGCCCCGACATCGTCAATTTCGTACACTCGAACATCTCCAAGAACAGCCGCCAGCCATACGCCGTCAGTCGTCGCGCTGGTCACCAGACCTCCGCCGAATCCTGGGGTACCGGCCGAGCCGTCTCCCGTATCCCCCGTGTTCCCGGCGGCGGAACCCACCGCGCCGGCCAAGGAGCCTTTGGAAACATGTGCCGCGGCGGACGCATGTTCGCCCCGACCAAGATCTGGCGCCGCTGGCACAGGAAGATCAACGTGAACCAGAAGCGCTACGCCGTCGTCTCCGCCATTGCTGCCTCCGCCATTCCTTCCCTCGTCCTCGCCCGCGGCCACCGCATCGAGTCTGTCCCGGAGCTCCCCCTTGTCGTCAGCGACTCCGCCGAAGGAGTCGAGAAGACAAAAGAAGCGATCAAAGTCCTCAAGCAGATCGGAGCATTCCCGGACGCCGAAAAGGCTAAAGACAGCCGCAGCATTCGTCCCGGCAAGGGAAAAATGCGTAACCGCCGCTACATCTCTCGCCGGGGACCACTTGTGGTGTACGGAACGGAAGGTGCGAAGGCCGTTAAGGCCTTCCGTAACGTCCCCGGCGTCGAGGTCGCCAACGTCGAGAGGCTGAACCTTCTGAAGCTGGCCCCCGGTGGGCACCTCGGGAGGTTTGTAATTTGGACCAAGAGCGCTTTCGAGAAGTTGGATTCAATTTACGGGTCTTTTGATAAGCCCTCTGAGAAGAAGAAGGGATACCTGCTTCCCAGGTCCAAGATGGTGAATTCGGACCTCTCCAGGATTATTAATTCTGATGAGGTGCAATCTGTTGTGAGGCCCATTAAGAAGGATGTGAAGAGGGCCACTCTCAAGAAGAACCCTCTTAAGAATCTCAACTCGATGCTGAAGCTGAATCCTTATGCCAAGACTGCTAAGAGGATGGCCCTTCTCGCTGAGGCACAGCGGGTTAAGGTCAAGAAGGAGAAGCTCGACAAGAAGAGGAAGACTGTCTCTAAGGAGGAAGCTTCTGCCATCAAGGCTGCTGGGAAAGCATGGTATCACACTATGGTGTCAGATTCTGATTATACAGAATTCGACAACTTTTCTAAGTGGTTGGGTGTTTCACAGTAA 1218 0.5714 MAAAARPLVTVQALDGDMATDASATVPIPDVMKASIRPDIVNFVHSNISKNSRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYAVVSAIAASAIPSLVLARGHRIESVPELPLVVSDSAEGVEKTKEAIKVLKQIGAFPDAEKAKDSRSIRPGKGKMRNRRYISRRGPLVVYGTEGAKAVKAFRNVPGVEVANVERLNLLKLAPGGHLGRFVIWTKSAFEKLDSIYGSFDKPSEKKKGYLLPRSKMVNSDLSRIINSDEVQSVVRPIKKDVKRATLKKNPLKNLNSMLKLNPYAKTAKRMALLAEAQRVKVKKEKLDKKRKTVSKEEASAIKAAGKAWYHTMVSDSDYTEFDNFSKWLGVSQ* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1047 405 PANTHER 60S RIBOSOMAL PROTEIN L4 2 405 IPR045240 -
Gso13g1047 405 Pfam 60S ribosomal protein L4 C-terminal domain 280 351 IPR025755 -
Gso13g1047 405 Gene3D - 3 308 IPR023574 GO:0003735|GO:0005840|GO:0006412
Gso13g1047 405 Coils Coil 342 362 - -
Gso13g1047 405 MobiDBLite consensus disorder prediction 54 95 - -
Gso13g1047 405 Pfam Ribosomal protein L4/L1 family 27 266 IPR002136 GO:0003735|GO:0005840|GO:0006412
Gso13g1047 405 ProSitePatterns Ribosomal protein L1e signature. 120 146 IPR013000 -
Gso13g1047 405 PANTHER BNAC03G35890D PROTEIN 2 405 - -
Gso13g1047 405 MobiDBLite consensus disorder prediction 54 73 - -
Gso13g1047 405 SUPERFAMILY Ribosomal protein L4 15 267 IPR023574 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1047 Gso-Chr13 24907744 24910390 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1047 2 405 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 83.911 0.0 694
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1047 K02930 - gmx:100779764 780.4